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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:598.3 nTPM
HPA:598.3 nTPM
FANTOM5:435.7 Scaled Tags Per Million
Pig:531.4 nTPM
Mouse:741.3 nTPM
Allen mouse:22.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 598.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 435.6
2032 Female, age 42, unknown 490.4
2396 Male, age 61, right hemisphere 413.1
2497 Male, age 66, unknown 403.2
Centromedial thalamic nucleus
nTPM: 518.1
2279 Female, age 85, left hemisphere 602.0
2401 Male, age 76, right hemisphere 434.3
Habenula
nTPM: 320.2
2203 Male, age 61, left hemisphere 378.6
2252 Male, age 62, unknown 318.8
1957 Male, age 80, both hemispheres 313.5
2276 Male, age 66, unknown 269.7
Lateral geniculate body
nTPM: 540.3
2575 Female, age 94, right hemisphere 773.7
2841 Male, age 80, both hemispheres 627.5
2106 Female, age 67, right hemisphere 593.0
1953 Male, age 62, unknown 514.3
2035 Female, age 72, unknown 511.4
2659 Male, age 66, unknown 488.9
2399 Male, age 61, left hemisphere 436.0
2857 Male, age 74, right hemisphere 377.6
Lateral thalamic nuclei
nTPM: 483.6
2765 Female, age 67, both hemispheres 743.7
2573 Female, age 94, left hemisphere 545.7
2661 Female, age 72, unknown 423.8
2577 Male, age 74, both hemispheres 381.5
1903 Male, age 76, left hemisphere 323.3
Medial dorsal thalamic nucleus
nTPM: 362.6
2660 Female, age 72, unknown 517.6
1859 Male, age 76, both hemispheres 410.5
2576 Male, age 74, both hemispheres 396.1
1930 Female, age 42, unknown 380.8
1810 Male, age 48, unknown 369.7
1971 Male, age 61, right hemisphere 366.1
2492 Male, age 75, right hemisphere 361.3
2402 Female, age 67, both hemispheres 349.5
2026 Male, age 62, unknown 331.0
2039 Female, age 72, unknown 325.0
2283 Male, age 80, right hemisphere 314.9
2498 Male, age 66, unknown 308.1
2572 Female, age 94, right hemisphere 283.6
Medial geniculate body
nTPM: 391.0
2571 Male, age 75, right hemisphere 431.5
2217 Female, age 72, unknown 426.3
2657 Male, age 74, right hemisphere 423.6
2207 Male, age 80, right hemisphere 409.5
2650 Female, age 94, left hemisphere 368.2
2049 Male, age 76, both hemispheres 360.3
1811 Female, age 42, unknown 317.9
Nucleus reuniens
nTPM: 568.4
2210 Female, age 85, left hemisphere 778.2
2205 Male, age 80, left hemisphere 533.1
2212 Female, age 67, left hemisphere 394.0
Nucleus rhomboideus
nTPM: 466.4
2280 Female, age 85, left hemisphere 706.2
2213 Female, age 67, left hemisphere 390.1
2206 Male, age 80, both hemispheres 303.0
Posterior thalamic nucleus
nTPM: 325.0
2266 Male, age 76, right hemisphere 408.1
2655 Male, age 74, right hemisphere 307.2
2495 Female, age 67, right hemisphere 300.9
2649 Female, age 94, both hemispheres 284.0
Pulvinar
nTPM: 423.0
2398 Male, age 61, left hemisphere 512.8
1972 Male, age 62, unknown 504.5
1932 Male, age 80, right hemisphere 475.9
1899 Female, age 42, unknown 444.6
2724 Male, age 74, right hemisphere 413.6
2214 Male, age 76, right hemisphere 403.8
1929 Male, age 48, unknown 396.1
2582 Female, age 72, unknown 377.1
2499 Male, age 66, unknown 365.3
2496 Female, age 67, right hemisphere 336.7
Subthalamic nucleus
nTPM: 598.3
2124 Male, age 62, unknown 771.8
2282 Male, age 61, both hemispheres 715.5
2056 Female, age 72, unknown 697.6
2275 Male, age 66, unknown 643.4
2216 Male, age 48, unknown 577.5
2658 Male, age 74, both hemispheres 558.0
2779 Female, age 42, unknown 487.4
2406 Female, age 72, unknown 334.8
Ventral posterolateral thalamic nucleus
nTPM: 466.0
2570 Male, age 75, right hemisphere 593.8
2740 Male, age 76, right hemisphere 555.2
2581 Female, age 72, unknown 481.0
2397 Male, age 61, right hemisphere 448.4
2578 Male, age 74, both hemispheres 392.6
2197 Male, age 80, both hemispheres 324.9
Ventral posteromedial thalamic nucleus
nTPM: 444.2
2281 Male, age 75, right hemisphere 659.5
2127 Male, age 76, right hemisphere 427.9
2202 Male, age 61, left hemisphere 407.9
2653 Male, age 74, both hemispheres 397.7
2758 Male, age 80, both hemispheres 328.1
Ventral thalamic nuclei
nTPM: 478.4
2858 Female, age 72, unknown 592.8
2291 Female, age 72, unknown 528.7
2580 Male, age 66, unknown 524.8
2652 Male, age 74, left hemisphere 519.5
1845 Male, age 48, unknown 473.3
1860 Male, age 76, both hemispheres 452.8
2285 Male, age 62, unknown 418.4
1912 Female, age 42, unknown 401.1
2204 Male, age 80, both hemispheres 393.9
Ventromedial nucleus
nTPM: 314.9
1982 Female, age 72, unknown 334.9
1822 Female, age 42, unknown 294.9
Zona incerta
nTPM: 520.6
2215 Male, age 66, unknown 713.8
2822 Male, age 74, right hemisphere 614.9
2403 Male, age 62, unknown 508.5
2663 Female, age 72, unknown 430.2
2208 Male, age 80, right hemisphere 335.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 435.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 435.7
FF:10154-103A1 76 years, female 435.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 531.4
Pig sample Sample description nTPM
Thalamus
nTPM: 531.4
Samples: 4

Max nTPM: 893.6
Min nTPM: 357.6
Sample A Female 441.9
Sample B Female 432.4
Sample C Male 357.6
Sample D Male 893.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 741.3
Mouse sample Sample description nTPM
Thalamus
nTPM: 741.3
Samples: 4

Max nTPM: 794.8
Min nTPM: 702.1
Sample A Male 727.1
Sample B Male 702.1
Sample C Female 794.8
Sample D Female 741.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 22.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 22.4
69015613 Antisense, RP_050315_01_C12, Mouse strain C57BL/6J (56 days, male) 22.4

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