MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:627.4 nTPM
HPA:627.4 nTPM
GTEx:493.0 nTPM
FANTOM5:653.7 Scaled Tags Per Million
Pig:662.0 nTPM
Mouse:657.4 nTPM
Allen mouse:26.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 627.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 500.9
2411 Female, age 72, unknown 645.8
1870 Female, age 42, unknown 576.8
1830 Male, age 51, unknown 574.2
2019 Male, age 18, unknown 557.7
1833 Male, age 53, unknown 550.7
2828 Female, age 72, unknown 456.8
2666 Male, age 74, left hemisphere 421.9
2586 Male, age 75, left hemisphere 414.9
1827 Male, age 72, unknown 413.2
2219 Male, age 76, both hemispheres 396.7
Dorsal raphe nucleus
nTPM: 423.9
2750 Male, age 76, both hemispheres 646.6
1828 Male, age 53, unknown 396.3
2016 Female, age 72, unknown 380.6
2047 Male, age 72, unknown 354.3
2298 Female, age 72, unknown 341.5
Inferior colliculus
nTPM: 392.5
1848 Female, age 42, unknown 408.2
1890 Male, age 53, unknown 397.6
2849 Male, age 72, unknown 384.7
2097 Female, age 72, unknown 379.6
Median raphe nucleus
nTPM: 405.8
2220 Male, age 76, midline 405.8
Pedunculopontine tegmental nucleus
nTPM: 469.7
2334 Male, age 80, both hemispheres 519.3
2338 Male, age 61, both hemispheres 445.4
1921 Female, age 85, both hemispheres 444.5
Periaquaductal grey, anterior
nTPM: 360.2
1947 Male, age 18, unknown 391.6
2502 Female, age 75, unknown 344.7
1795 Male, age 51, unknown 344.3
Periaquaductal grey, dorsal
nTPM: 329.5
2464 Female, age 72, unknown 403.8
1831 Male, age 72, unknown 346.0
1840 Male, age 53, unknown 295.6
2850 Male, age 76, both hemispheres 272.7
Periaquaductal grey, lateral
nTPM: 362.8
2272 Male, age 74, both hemispheres 427.0
2053 Male, age 18, unknown 383.2
2140 Male, age 76, both hemispheres 278.2
Pretectal area
nTPM: 393.0
2316 Male, age 76, right hemisphere 449.5
2407 Male, age 75, both hemispheres 448.6
1815 Male, age 53, unknown 448.1
2007 Male, age 72, unknown 426.0
1817 Female, age 42, unknown 414.9
2825 Male, age 18, unknown 397.6
2273 Male, age 74, both hemispheres 394.4
2224 Female, age 72, unknown 359.0
2667 Female, age 75, unknown 346.4
1944 Female, age 72, unknown 320.2
1816 Male, age 51, unknown 318.1
Red nucleus
nTPM: 627.4
1865 Male, age 51, unknown 697.2
1904 Male, age 53, unknown 680.8
2769 Male, age 72, unknown 672.9
1821 Female, age 72, unknown 669.5
2227 Male, age 72, unknown 657.1
2823 Male, age 76, right hemisphere 654.0
2503 Female, age 72, unknown 631.7
2785 Male, age 18, unknown 618.6
2588 Male, age 74, left hemisphere 596.1
1954 Female, age 42, unknown 586.5
2584 Male, age 75, left hemisphere 548.5
2725 Female, age 75, unknown 516.5
Substantia nigra
nTPM: 408.8
2583 Male, age 75, right hemisphere 546.9
2590 Female, age 75, unknown 517.9
1851 Male, age 51, unknown 443.7
1889 Female, age 72, unknown 440.5
2409 Female, age 72, unknown 410.4
1941 Male, age 53, unknown 385.1
1916 Female, age 42, unknown 353.5
2699 Male, age 18, unknown 350.2
2241 Male, age 72, unknown 336.2
2665 Male, age 74, both hemispheres 303.6
Superior colliculus
nTPM: 449.3
1913 Female, age 42, unknown 569.8
1995 Male, age 72, unknown 561.0
2587 Male, age 74, left hemisphere 504.1
1895 Male, age 76, right hemisphere 487.8
2668 Female, age 75, unknown 474.6
1839 Male, age 51, unknown 457.0
1796 Male, age 53, unknown 415.2
2261 Male, age 18, unknown 365.5
2087 Female, age 72, unknown 338.3
2664 Male, age 75, both hemispheres 319.3
Ventral tegmental area
nTPM: 480.6
2223 Female, age 72, unknown 695.4
2410 Female, age 72, unknown 537.0
2218 Male, age 76, both hemispheres 418.8
1942 Male, age 51, unknown 415.6
2021 Male, age 53, unknown 413.6
1915 Female, age 42, unknown 403.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 493.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 493.0
Samples: 139

Max nTPM: 1779.3
Min nTPM: 112.9
Std nTPM: 284.0
Median nTPM: 430.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1779.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1489.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1303.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1274.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1078.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1052.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1039.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1014.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1014.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 1005.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1002.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 653.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 653.7
FF:10158-103A5 76 years, female 653.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 662.0
Pig sample Sample description nTPM
Midbrain
nTPM: 662.0
Samples: 4

Max nTPM: 1351.9
Min nTPM: 381.2
Sample A Female 1351.9
Sample B Female 492.1
Sample C Male 381.2
Sample D Male 422.9
Periaqueductal gray
nTPM: 362.3
Samples: 3

Max nTPM: 402.2
Min nTPM: 317.6
Sample B Female 402.2
Sample C Male 317.6
Sample D Male 367.1
Substantia nigra
nTPM: 526.6
Samples: 4

Max nTPM: 833.3
Min nTPM: 273.8
Sample A Female 563.7
Sample B Female 273.8
Sample C Male 435.6
Sample D Male 833.3
Superior colliculi
nTPM: 497.7
Samples: 4

Max nTPM: 630.6
Min nTPM: 251.9
Sample A Female 630.6
Sample B Female 251.9
Sample C Male 497.6
Sample D Male 610.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 657.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 657.4
Samples: 4

Max nTPM: 679.0
Min nTPM: 614.1
Sample A Male 667.3
Sample B Male 614.1
Sample C Female 669.2
Sample D Female 679.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 26.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 26.8
69015613 Antisense, RP_050315_01_C12, Mouse strain C57BL/6J (56 days, male) 26.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.