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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:710.7 nTPM
HPA:710.7 nTPM
FANTOM5:458.4 Scaled Tags Per Million
Pig:489.3 nTPM
Allen mouse:20.8 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 710.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 616.3
2188 Female, age 91, both hemispheres 741.4
2301 Female, age 85, both hemispheres 699.1
2090 Male, age 80, both hemispheres 620.2
1984 Male, age 76, both hemispheres 404.7
Dorsal cochlear nucleus
nTPM: 528.0
2187 Female, age 91, both hemispheres 686.3
2802 Male, age 74, right hemisphere 530.7
2378 Male, age 80, both hemispheres 496.9
2370 Male, age 61, both hemispheres 480.4
2058 Male, age 76, both hemispheres 445.5
Dorsal tegmental nucleus
nTPM: 493.8
2083 Male, age 80, both hemispheres 639.4
2326 Male, age 74, both hemispheres 579.3
1936 Male, age 76, left hemisphere 405.5
2358 Male, age 61, both hemispheres 350.9
Dorsolateral tegmental area
nTPM: 520.4
2751 Female, age 85, both hemispheres 739.0
2654 Male, age 80, both hemispheres 595.4
2337 Male, age 61, both hemispheres 491.8
2360 Male, age 74, both hemispheres 411.3
2141 Male, age 76, both hemispheres 364.5
Kolliker-Fuse nucleus
nTPM: 562.4
2793 Female, age 91, left hemisphere 776.8
2163 Male, age 80, both hemispheres 527.8
2315 Male, age 76, right hemisphere 382.5
Lateral lemniscal nuclei
nTPM: 580.8
2320 Female, age 91, left hemisphere 711.5
2746 Female, age 85, left hemisphere 588.5
2453 Male, age 74, right hemisphere 565.4
2169 Male, age 76, both hemispheres 526.8
2036 Male, age 80, both hemispheres 511.7
Lateral parabrachial nucleus
nTPM: 555.3
2792 Male, age 76, both hemispheres 664.0
2013 Male, age 80, both hemispheres 598.0
2790 Male, age 61, both hemispheres 486.5
2139 Female, age 85, right hemisphere 472.4
Lateral vestibular nucleus
nTPM: 548.1
2311 Male, age 80, both hemispheres 604.0
2184 Male, age 76, both hemispheres 492.3
Locus coeruleus
nTPM: 377.5
2720 Male, age 74, both hemispheres 416.7
2162 Male, age 80, both hemispheres 416.5
2317 Female, age 72, unknown 394.0
2123 Female, age 91, both hemispheres 386.4
2014 Male, age 55, unknown 376.2
2788 Male, age 74, unknown 331.3
1980 Male, age 76, both hemispheres 321.6
Medial olivary nucleus
nTPM: 710.7
1943 Male, age 61, both hemispheres 865.8
1962 Male, age 76, both hemispheres 749.2
2138 Female, age 91, both hemispheres 633.5
2851 Male, age 80, both hemispheres 594.2
Medial parabrachial nucleus
nTPM: 613.8
2170 Female, age 91, both hemispheres 810.5
2463 Female, age 85, right hemisphere 684.7
2854 Male, age 80, both hemispheres 590.2
2786 Male, age 76, both hemispheres 497.2
2156 Male, age 61, both hemispheres 486.3
Medial periolivary nuclei
nTPM: 558.3
2081 Male, age 80, both hemispheres 635.1
2458 Female, age 91, both hemispheres 603.4
2791 Male, age 74, right hemisphere 588.4
2063 Male, age 76, both hemispheres 521.0
2171 Female, age 85, both hemispheres 443.8
Motor facial nucleus
nTPM: 571.0
2126 Male, age 61, both hemispheres 737.4
2365 Male, age 74, right hemisphere 638.4
2697 Female, age 85, both hemispheres 579.6
2327 Male, age 80, both hemispheres 500.5
2795 Female, age 91, both hemispheres 498.0
2062 Male, age 76, both hemispheres 472.3
Motor trigeminal nucleus
nTPM: 569.4
2560 Male, age 74, both hemispheres 678.6
2321 Female, age 91, both hemispheres 644.4
2079 Male, age 80, both hemispheres 541.7
2335 Male, age 61, both hemispheres 502.6
2309 Male, age 76, both hemispheres 479.8
Nuclei of the trapezoid body
nTPM: 531.9
2159 Male, age 61, both hemispheres 607.4
2166 Male, age 80, both hemispheres 589.7
2368 Female, age 91, both hemispheres 551.7
1983 Male, age 76, both hemispheres 492.3
2735 Female, age 85, both hemispheres 418.5
Paramedian reticular nucleus
nTPM: 531.6
2057 Male, age 80, both hemispheres 575.9
2050 Female, age 85, both hemispheres 570.5
2052 Male, age 76, both hemispheres 490.1
2313 Male, age 61, both hemispheres 490.1
Pontine nuclei
nTPM: 644.4
2454 Male, age 74, left hemisphere 889.6
2319 Female, age 91, both hemispheres 740.2
2109 Female, age 72, unknown 703.4
1863 Male, age 55, unknown 597.8
1968 Male, age 76, left hemisphere 588.1
2115 Male, age 80, left hemisphere 574.8
2787 Female, age 85, both hemispheres 542.7
2727 Male, age 61, right hemisphere 518.6
Pontine raphe nucleus
nTPM: 448.0
2122 Female, age 85, midline 484.6
2853 Male, age 76, midline 411.3
Posteroventral cochlear nucleus
nTPM: 608.4
2135 Female, age 91, both hemispheres 799.8
2341 Male, age 80, both hemispheres 701.6
2070 Male, age 76, both hemispheres 568.6
2371 Male, age 61, both hemispheres 503.9
2752 Female, age 85, both hemispheres 468.1
Principal sensory trigeminal nucleus
nTPM: 537.1
2367 Female, age 91, left hemisphere 730.7
2008 Male, age 80, left hemisphere 506.9
2158 Male, age 61, both hemispheres 463.4
2324 Male, age 76, both hemispheres 447.5
Reticular pontine nucleus, caudal
nTPM: 639.0
2559 Male, age 74, both hemispheres 761.5
2457 Female, age 91, both hemispheres 677.9
2092 Male, age 76, both hemispheres 582.2
2332 Male, age 80, right hemisphere 534.4
Reticular pontine nucleus, oral
nTPM: 654.8
2361 Male, age 74, both hemispheres 809.2
2366 Female, age 91, both hemispheres 723.3
2012 Female, age 85, both hemispheres 602.2
1939 Male, age 80, both hemispheres 598.2
2167 Male, age 76, both hemispheres 541.2
Reticulotegmental nucleus
nTPM: 548.0
2322 Female, age 91, both hemispheres 659.0
2452 Male, age 74, both hemispheres 589.6
2333 Male, age 80, both hemispheres 559.9
2325 Male, age 76, both hemispheres 383.5
Spinal trigeminal nucleus, oral
nTPM: 505.1
2164 Male, age 80, both hemispheres 564.8
1978 Male, age 76, both hemispheres 513.8
2737 Female, age 85, both hemispheres 436.6
Subcoeruleus area
nTPM: 546.7
2369 Female, age 85, left hemisphere 798.4
1958 Male, age 80, both hemispheres 521.1
2089 Male, age 76, left hemisphere 520.4
2323 Female, age 91, left hemisphere 456.5
2451 Male, age 74, both hemispheres 437.1
Superior olive
nTPM: 588.8
2020 Male, age 76, both hemispheres 629.8
2364 Male, age 74, right hemisphere 621.6
2329 Male, age 80, right hemisphere 612.0
2561 Female, age 91, both hemispheres 565.9
1875 Female, age 85, both hemispheres 514.5
Superior vestibular nucleus
nTPM: 474.0
2015 Male, age 80, both hemispheres 534.2
2383 Male, age 74, both hemispheres 444.4
2061 Male, age 76, both hemispheres 443.4
Ventral periolivary nuclei
nTPM: 505.9
2023 Male, age 76, both hemispheres 640.5
2165 Male, age 80, both hemispheres 534.4
2794 Female, age 91, left hemisphere 437.9
2130 Female, age 85, both hemispheres 411.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 575.1
2456 Female, age 91, both hemispheres 674.6
2449 Male, age 74, both hemispheres 601.6
2840 Female, age 85, both hemispheres 566.8
1959 Male, age 76, both hemispheres 555.5
2161 Male, age 80, both hemispheres 555.4
2359 Male, age 61, both hemispheres 496.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 458.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 317.1
FF:10165-103B3 76 years, female 387.2
FF:10182-103D2 60 years, female 247.0
Pons
Scaled Tags Per Million: 458.4
FF:10033-101E6 18-54 years, mixed 458.4

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 489.3
Pig sample Sample description nTPM
Pons
nTPM: 489.3
Samples: 4

Max nTPM: 664.5
Min nTPM: 356.7
Sample A Female 480.0
Sample B Female 356.7
Sample C Male 456.0
Sample D Male 664.5

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.8
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 20.8
69015613 Antisense, RP_050315_01_C12, Mouse strain C57BL/6J (56 days, male) 20.8

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.