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  • ATP1A3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
63.882
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:115.4 nTPM
HPA:115.4 nTPM
GTEx:135.1 nTPM
FANTOM5:728.6 Scaled Tags Per Million

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB033630
Amygdala mean intensity 63.882
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract -
Basal medial amygdaloid nucleus 53.706
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 55.328
Cortical amygdala 63.882
Central amygdala 41.242
Medial amygdaloid nucleus 26.636

AMYGDALA - HPA Brain RNA-seq
Max nTPM 115.4
Sample id Sample description nTPM
Amygdala
nTPM: 35.4
2814 Male, age 76, right hemisphere 148.6
1987 Female, age 91, left hemisphere 28.5
2514 Male, age 75, right hemisphere 0.0
2517 Female, age 94, left hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 46.0
2243 Female, age 91, right hemisphere 109.7
2685 Female, age 94, left hemisphere 64.0
1955 Male, age 76, both hemispheres 57.1
2110 Male, age 80, left hemisphere 45.5
2609 Male, age 75, right hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 43.5
1905 Male, age 76, both hemispheres 134.2
2239 Male, age 80, left hemisphere 40.9
2701 Female, age 91, right hemisphere 38.3
2826 Female, age 94, left hemisphere 4.3
2515 Male, age 75, right hemisphere 0.0
Corticomedial amygdala
nTPM: 41.1
2242 Female, age 91, right hemisphere 75.7
2429 Female, age 94, left hemisphere 63.3
2240 Male, age 76, both hemispheres 57.4
2829 Male, age 80, left hemisphere 49.9
2535 Female, age 67, right hemisphere 0.6
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 37.7
1883 Male, age 76, both hemispheres 127.6
2534 Female, age 94, left hemisphere 72.5
2255 Female, age 91, right hemisphere 26.5
2256 Male, age 80, left hemisphere 0.0
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 115.4
1974 Female, age 91, both hemispheres 198.8
2486 Female, age 94, both hemispheres 125.4
2201 Male, age 74, unknown 22.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 135.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 135.1
Samples: 152

Max nTPM: 437.8
Min nTPM: 2.8
Std nTPM: 82.7
Median nTPM: 121.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 437.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 424.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 356.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 336.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 328.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 305.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 305.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 300.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 273.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 259.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 258.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 256.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 249.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 249.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 239.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 239.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 236.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 228.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 227.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 227.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 226.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 225.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 224.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 214.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 214.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 209.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 208.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 206.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 206.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 206.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 201.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 197.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 195.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 191.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 191.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 190.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 188.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 185.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 183.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 180.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 180.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 176.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 175.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 174.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 172.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 172.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 171.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 164.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 163.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 162.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 161.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 160.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 157.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 151.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 149.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 149.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 148.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 148.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 147.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 147.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 147.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 146.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 141.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 141.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 138.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 138.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 136.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 129.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 125.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 125.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 123.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 122.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 122.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 122.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 121.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 121.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 120.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 120.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 116.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 115.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 112.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 112.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 112.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 111.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 109.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 109.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 109.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 106.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 105.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 104.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 100.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 100.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 99.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 99.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 99.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 99.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 95.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 94.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 93.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 90.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 89.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 87.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 84.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 84.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 83.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 83.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 81.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 77.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 77.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 76.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 73.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 72.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 70.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 67.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 66.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 65.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 65.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 64.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 64.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 63.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 63.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 62.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 61.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 60.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 60.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 60.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 59.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 51.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 48.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 48.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 47.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 44.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 41.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 40.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 35.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 34.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 34.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 29.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 29.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 27.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 26.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 26.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 21.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 13.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 13.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 8.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 728.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 728.6
FF:10151-102I7 76 years, female 728.6

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