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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:26.3 nTPM
HPA:26.3 nTPM
GTEx:47.2 nTPM
FANTOM5:302.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 0.0
1981 Female, age 72, midline 0.0
2048 Male, age 55, midline 0.0
2194 Female, age 79, both hemispheres 0.0
2565 Male, age 75, midline 0.0
2816 Male, age 47, midline 0.0
Cervical spinal cord, dorsal horn
nTPM: 26.3
2297 Male, age 75, both hemispheres 93.9
2721 Male, age 90, both hemispheres 63.9
1877 Male, age 55, unknown 0.0
2069 Male, age 47, both hemispheres 0.0
2173 Female, age 72, unknown 0.0
2296 Male, age 66, both hemispheres 0.0
Cervical spinal cord, ventral horn
nTPM: 1.4
2068 Male, age 55, unknown 8.8
2098 Female, age 72, unknown 0.0
2295 Male, age 66, both hemispheres 0.0
2480 Male, age 75, both hemispheres 0.0
2809 Male, age 90, both hemispheres 0.0
2820 Female, age 79, both hemispheres 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 47.2
Samples: 159

Max nTPM: 429.8
Min nTPM: 1.0
Std nTPM: 69.3
Median nTPM: 20.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 429.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 378.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 313.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 291.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 279.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 237.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 196.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 196.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 152.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 151.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 150.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 144.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 140.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 132.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 117.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 112.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 109.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 108.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 102.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 100.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 97.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 95.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 93.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 92.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 91.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 89.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 89.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 86.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 83.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 82.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 80.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 79.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 77.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 72.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 71.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 71.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 70.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 60.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 59.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 57.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 56.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 55.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 55.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 55.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 52.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 51.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 48.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 47.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 46.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 44.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 42.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 42.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 41.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 40.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 39.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 36.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 35.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 35.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 34.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 34.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 33.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 33.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 31.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 31.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 30.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 28.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 28.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 28.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 26.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 25.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 24.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 23.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 23.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 22.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 22.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 21.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 21.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 20.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 20.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 20.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 20.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 19.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 19.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 19.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 18.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 17.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 17.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 16.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 16.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 16.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 16.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 16.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 15.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 15.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 15.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 13.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 13.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 12.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 12.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 12.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 10.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 9.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 9.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 9.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 9.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 9.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 8.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 8.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 8.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 7.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 7.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 7.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 7.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 7.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 7.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 7.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 6.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 6.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 6.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 5.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 5.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 5.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 5.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 4.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 4.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 4.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 3.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 3.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 2.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 2.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 302.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 302.5
FF:10181-103D1 60 years, female 543.9
FF:10159-103A6 76 years, female 61.0

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