MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.8 nTPM
HPA:61.8 nTPM
GTEx:159.4 nTPM
FANTOM5:27.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
2666 Male, age 74, left hemisphere 67.7
2219 Male, age 76, both hemispheres 45.8
2019 Male, age 18, unknown 32.0
1827 Male, age 72, unknown 9.9
2411 Female, age 72, unknown 7.9
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 12.2
2298 Female, age 72, unknown 42.5
1828 Male, age 53, unknown 15.7
2047 Male, age 72, unknown 2.8
2016 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 19.6
2097 Female, age 72, unknown 55.0
1848 Female, age 42, unknown 17.0
1890 Male, age 53, unknown 6.4
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 49.3
2220 Male, age 76, midline 49.3
Pedunculopontine tegmental nucleus
nTPM: 38.6
1921 Female, age 85, both hemispheres 82.9
2334 Male, age 80, both hemispheres 17.9
2338 Male, age 61, both hemispheres 14.9
Periaquaductal grey, anterior
nTPM: 1.1
1795 Male, age 51, unknown 3.3
1947 Male, age 18, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 61.8
2667 Female, age 75, unknown 201.1
1944 Female, age 72, unknown 143.2
1817 Female, age 42, unknown 110.6
1816 Male, age 51, unknown 110.5
2007 Male, age 72, unknown 94.1
1815 Male, age 53, unknown 20.6
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 1.8
2785 Male, age 18, unknown 16.8
1821 Female, age 72, unknown 5.8
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 42.0
1941 Male, age 53, unknown 111.0
1916 Female, age 42, unknown 106.9
2665 Male, age 74, both hemispheres 89.8
1889 Female, age 72, unknown 87.1
1851 Male, age 51, unknown 25.3
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 31.6
2668 Female, age 75, unknown 180.4
2087 Female, age 72, unknown 86.9
1895 Male, age 76, right hemisphere 41.5
1796 Male, age 53, unknown 5.8
2261 Male, age 18, unknown 1.4
1839 Male, age 51, unknown 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 32.0
2218 Male, age 76, both hemispheres 83.1
2410 Female, age 72, unknown 59.8
1915 Female, age 42, unknown 48.9
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.4
Samples: 139

Max nTPM: 1277.7
Min nTPM: 2.5
Std nTPM: 186.1
Median nTPM: 84.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1277.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 903.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 592.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 570.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 535.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 524.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 485.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 478.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 472.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 440.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 421.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.