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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:80.2 nTPM
HPA:80.2 nTPM
GTEx:89.2 nTPM
FANTOM5:111.1 Scaled Tags Per Million
Pig:4.6 nTPM
Mouse:108.1 nTPM
Allen mouse:24.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 80.2
Sample id Sample description nTPM
Amygdala
nTPM: 47.0
2517 Female, age 94, left hemisphere 65.5
1987 Female, age 91, left hemisphere 57.8
2514 Male, age 75, right hemisphere 43.5
2814 Male, age 76, right hemisphere 35.0
2695 Female, age 67, right hemisphere 33.2
Basal amygdala
nTPM: 79.0
2685 Female, age 94, left hemisphere 108.8
2243 Female, age 91, right hemisphere 100.0
2827 Female, age 67, right hemisphere 79.8
2110 Male, age 80, left hemisphere 67.4
2609 Male, age 75, right hemisphere 66.4
1955 Male, age 76, both hemispheres 51.9
Central amygdala
nTPM: 60.1
2826 Female, age 94, left hemisphere 73.7
2239 Male, age 80, left hemisphere 73.0
2701 Female, age 91, right hemisphere 64.8
2515 Male, age 75, right hemisphere 52.7
1905 Male, age 76, both hemispheres 36.2
Corticomedial amygdala
nTPM: 80.2
2242 Female, age 91, right hemisphere 106.1
2535 Female, age 67, right hemisphere 99.6
2829 Male, age 80, left hemisphere 94.0
2429 Female, age 94, left hemisphere 71.3
2428 Male, age 75, right hemisphere 57.0
2240 Male, age 76, both hemispheres 53.4
Lateral amygdala
nTPM: 56.8
2534 Female, age 94, left hemisphere 72.7
2255 Female, age 91, right hemisphere 68.4
2256 Male, age 80, left hemisphere 63.6
2830 Female, age 67, right hemisphere 50.5
2516 Male, age 75, right hemisphere 43.8
1883 Male, age 76, both hemispheres 41.8
Stria terminalis, bed nucleus
nTPM: 57.1
2201 Male, age 74, unknown 61.9
2486 Female, age 94, both hemispheres 58.5
1974 Female, age 91, both hemispheres 50.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 89.2
Samples: 152

Max nTPM: 173.2
Min nTPM: 22.8
Std nTPM: 29.3
Median nTPM: 84.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 173.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 157.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 153.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 148.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 148.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 146.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 141.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 141.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 137.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 136.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 135.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 133.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 133.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 132.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 131.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 131.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 130.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 129.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 127.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 125.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 123.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 122.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 122.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 121.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 120.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 119.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 118.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 117.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 116.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 115.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 114.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 113.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 112.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 112.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 111.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 111.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 110.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 109.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 109.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 109.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 108.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 108.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 107.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 106.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 106.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 105.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 105.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 101.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 101.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 99.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 98.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 97.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 97.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 97.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 97.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 97.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 96.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 96.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 96.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 95.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 94.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 93.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 93.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 92.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 89.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 88.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 88.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 88.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 87.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 86.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 85.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 85.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 84.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 84.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 83.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 83.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 82.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 81.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 80.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 79.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 78.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 77.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 77.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 77.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 76.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 76.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 76.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 76.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 76.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 75.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 75.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 75.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 75.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 74.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 74.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 73.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 73.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 73.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 72.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 72.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 72.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 72.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 72.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 72.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 72.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 71.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 71.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 70.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 70.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 70.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 69.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 69.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 68.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 67.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 67.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 66.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 65.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 65.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 63.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 61.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 61.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 58.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 58.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 58.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 56.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 54.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 51.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 51.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 49.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 47.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 46.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 46.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 46.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 42.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 41.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 39.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 37.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 37.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 37.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 26.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 111.1
FF:10151-102I7 76 years, female 111.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4.6
Pig sample Sample description nTPM
Amygdala
nTPM: 4.6
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.3
Sample A Female 4.7
Sample B Female 4.3
Sample C Male 4.9
Sample D Male 4.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 108.2
Samples: 4

Max nTPM: 112.9
Min nTPM: 104.9
Sample A Male 112.9
Sample B Male 106.0
Sample C Female 104.9
Sample D Female 108.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.2
67765715 Antisense, RP_040916_01_E10, Mouse strain C57BL/6J (56 days, male) 25.7
71836832 Antisense, RP_051017_02_B07, Mouse strain C57BL/6J (56 days, male) 22.7

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