MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.0 nTPM
HPA:44.0 nTPM
GTEx:35.3 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:22.3 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.8
2586 Male, age 75, left hemisphere 53.7
2666 Male, age 74, left hemisphere 41.0
2828 Female, age 72, unknown 38.3
1827 Male, age 72, unknown 37.5
2219 Male, age 76, both hemispheres 36.6
1870 Female, age 42, unknown 35.3
1833 Male, age 53, unknown 33.8
2411 Female, age 72, unknown 32.4
1830 Male, age 51, unknown 30.4
2019 Male, age 18, unknown 28.6
Dorsal raphe nucleus
nTPM: 36.1
2047 Male, age 72, unknown 42.9
2298 Female, age 72, unknown 38.7
2750 Male, age 76, both hemispheres 35.5
1828 Male, age 53, unknown 33.5
2016 Female, age 72, unknown 29.6
Inferior colliculus
nTPM: 33.6
2849 Male, age 72, unknown 35.4
1848 Female, age 42, unknown 33.2
2097 Female, age 72, unknown 32.9
1890 Male, age 53, unknown 32.8
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Pedunculopontine tegmental nucleus
nTPM: 34.1
1921 Female, age 85, both hemispheres 36.6
2334 Male, age 80, both hemispheres 35.9
2338 Male, age 61, both hemispheres 29.9
Periaquaductal grey, anterior
nTPM: 40.3
1795 Male, age 51, unknown 43.6
1947 Male, age 18, unknown 39.7
2502 Female, age 75, unknown 37.7
Periaquaductal grey, dorsal
nTPM: 35.2
1840 Male, age 53, unknown 41.0
2464 Female, age 72, unknown 33.8
2850 Male, age 76, both hemispheres 33.5
1831 Male, age 72, unknown 32.6
Periaquaductal grey, lateral
nTPM: 32.9
2053 Male, age 18, unknown 36.0
2140 Male, age 76, both hemispheres 34.4
2272 Male, age 74, both hemispheres 28.1
Pretectal area
nTPM: 36.3
1816 Male, age 51, unknown 44.1
2224 Female, age 72, unknown 41.7
2825 Male, age 18, unknown 39.8
1817 Female, age 42, unknown 36.9
1944 Female, age 72, unknown 36.9
2667 Female, age 75, unknown 36.8
1815 Male, age 53, unknown 35.3
2007 Male, age 72, unknown 34.9
2407 Male, age 75, both hemispheres 34.8
2316 Male, age 76, right hemisphere 30.5
2273 Male, age 74, both hemispheres 27.6
Red nucleus
nTPM: 29.0
2584 Male, age 75, left hemisphere 44.3
2588 Male, age 74, left hemisphere 32.2
2725 Female, age 75, unknown 30.4
2227 Male, age 72, unknown 29.2
2785 Male, age 18, unknown 28.6
2769 Male, age 72, unknown 28.3
2823 Male, age 76, right hemisphere 27.9
1904 Male, age 53, unknown 26.8
2503 Female, age 72, unknown 26.6
1954 Female, age 42, unknown 26.4
1865 Male, age 51, unknown 24.1
1821 Female, age 72, unknown 23.1
Substantia nigra
nTPM: 33.4
2665 Male, age 74, both hemispheres 42.9
2583 Male, age 75, right hemisphere 36.4
1916 Female, age 42, unknown 35.5
1851 Male, age 51, unknown 35.3
1889 Female, age 72, unknown 32.6
2241 Male, age 72, unknown 32.1
2699 Male, age 18, unknown 31.3
2590 Female, age 75, unknown 31.0
1941 Male, age 53, unknown 30.5
2409 Female, age 72, unknown 26.7
Superior colliculus
nTPM: 35.3
2664 Male, age 75, both hemispheres 42.8
1796 Male, age 53, unknown 39.4
2261 Male, age 18, unknown 38.9
2087 Female, age 72, unknown 37.9
2668 Female, age 75, unknown 36.5
1839 Male, age 51, unknown 33.5
2587 Male, age 74, left hemisphere 32.4
1913 Female, age 42, unknown 31.7
1895 Male, age 76, right hemisphere 30.0
1995 Male, age 72, unknown 30.0
Ventral tegmental area
nTPM: 36.9
1942 Male, age 51, unknown 39.3
2223 Female, age 72, unknown 39.0
2021 Male, age 53, unknown 38.8
1915 Female, age 42, unknown 36.6
2218 Male, age 76, both hemispheres 36.5
2410 Female, age 72, unknown 31.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.3
Samples: 139

Max nTPM: 58.0
Min nTPM: 18.7
Std nTPM: 7.0
Median nTPM: 35.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 58.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 48.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 47.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 47.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 46.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 46.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 46.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 45.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.7
FF:10158-103A5 76 years, female 23.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.9
Pig sample Sample description nTPM
Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 2.9
Sample C Male 2.8
Sample D Male 3.1
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 3.3
Min nTPM: 2.7
Sample B Female 2.8
Sample C Male 2.7
Sample D Male 3.3
Substantia nigra
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 2.7
Sample C Male 3.1
Sample D Male 3.0
Superior colliculi
nTPM: 2.4
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 2.3
Sample C Male 2.6
Sample D Male 2.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.4
Samples: 4

Max nTPM: 23.1
Min nTPM: 20.8
Sample A Male 23.1
Sample B Male 20.8
Sample C Female 22.4
Sample D Female 23.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
71836832 Antisense, RP_051017_02_B07, Mouse strain C57BL/6J (56 days, male) 10.9
67765715 Antisense, RP_040916_01_E10, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.