MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:301.1 nTPM
HPA:301.1 nTPM
GTEx:178.9 nTPM
FANTOM5:84.1 Scaled Tags Per Million
Pig:199.0 nTPM
Mouse:403.5 nTPM
Allen mouse:14.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 301.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 288.1
2666 Male, age 74, left hemisphere 318.0
2586 Male, age 75, left hemisphere 307.1
2019 Male, age 18, unknown 298.3
1827 Male, age 72, unknown 297.9
2828 Female, age 72, unknown 292.5
2411 Female, age 72, unknown 284.9
2219 Male, age 76, both hemispheres 282.0
1870 Female, age 42, unknown 270.7
1833 Male, age 53, unknown 267.1
1830 Male, age 51, unknown 262.6
Dorsal raphe nucleus
nTPM: 277.8
2298 Female, age 72, unknown 289.1
2047 Male, age 72, unknown 282.1
2750 Male, age 76, both hemispheres 276.2
1828 Male, age 53, unknown 276.0
2016 Female, age 72, unknown 265.4
Inferior colliculus
nTPM: 277.5
2097 Female, age 72, unknown 293.9
1890 Male, age 53, unknown 278.0
1848 Female, age 42, unknown 273.1
2849 Male, age 72, unknown 265.0
Median raphe nucleus
nTPM: 281.3
2220 Male, age 76, midline 281.3
Pedunculopontine tegmental nucleus
nTPM: 278.2
1921 Female, age 85, both hemispheres 285.9
2334 Male, age 80, both hemispheres 280.9
2338 Male, age 61, both hemispheres 267.7
Periaquaductal grey, anterior
nTPM: 287.1
1795 Male, age 51, unknown 298.8
2502 Female, age 75, unknown 282.2
1947 Male, age 18, unknown 280.4
Periaquaductal grey, dorsal
nTPM: 272.5
1831 Male, age 72, unknown 280.1
1840 Male, age 53, unknown 273.5
2464 Female, age 72, unknown 270.9
2850 Male, age 76, both hemispheres 265.4
Periaquaductal grey, lateral
nTPM: 269.0
2053 Male, age 18, unknown 277.6
2272 Male, age 74, both hemispheres 265.2
2140 Male, age 76, both hemispheres 264.3
Pretectal area
nTPM: 301.1
1816 Male, age 51, unknown 350.2
1944 Female, age 72, unknown 339.0
2007 Male, age 72, unknown 332.0
1817 Female, age 42, unknown 330.8
1815 Male, age 53, unknown 313.3
2667 Female, age 75, unknown 292.7
2407 Male, age 75, both hemispheres 283.3
2224 Female, age 72, unknown 273.0
2825 Male, age 18, unknown 270.9
2273 Male, age 74, both hemispheres 264.9
2316 Male, age 76, right hemisphere 261.4
Red nucleus
nTPM: 278.5
2785 Male, age 18, unknown 295.5
2584 Male, age 75, left hemisphere 292.5
2588 Male, age 74, left hemisphere 282.3
1821 Female, age 72, unknown 282.0
2503 Female, age 72, unknown 279.9
1954 Female, age 42, unknown 278.6
2227 Male, age 72, unknown 274.2
1904 Male, age 53, unknown 273.4
2769 Male, age 72, unknown 272.4
2823 Male, age 76, right hemisphere 270.9
1865 Male, age 51, unknown 270.7
2725 Female, age 75, unknown 270.0
Substantia nigra
nTPM: 291.5
1916 Female, age 42, unknown 313.6
1941 Male, age 53, unknown 309.8
1889 Female, age 72, unknown 305.7
1851 Male, age 51, unknown 299.9
2583 Male, age 75, right hemisphere 297.2
2665 Male, age 74, both hemispheres 293.5
2590 Female, age 75, unknown 278.7
2241 Male, age 72, unknown 275.8
2409 Female, age 72, unknown 270.5
2699 Male, age 18, unknown 270.5
Superior colliculus
nTPM: 294.1
2668 Female, age 75, unknown 329.1
2087 Female, age 72, unknown 323.9
2261 Male, age 18, unknown 309.8
1796 Male, age 53, unknown 299.7
2664 Male, age 75, both hemispheres 291.9
1913 Female, age 42, unknown 282.8
1995 Male, age 72, unknown 280.7
1895 Male, age 76, right hemisphere 278.4
2587 Male, age 74, left hemisphere 274.4
1839 Male, age 51, unknown 270.4
Ventral tegmental area
nTPM: 285.9
2410 Female, age 72, unknown 298.3
1915 Female, age 42, unknown 294.1
2218 Male, age 76, both hemispheres 291.4
1942 Male, age 51, unknown 286.7
2021 Male, age 53, unknown 274.1
2223 Female, age 72, unknown 270.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 178.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 178.9
Samples: 139

Max nTPM: 383.2
Min nTPM: 49.6
Std nTPM: 66.3
Median nTPM: 170.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 383.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 363.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 362.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 357.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 354.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 346.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 330.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 315.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 301.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 282.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 260.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.1
FF:10158-103A5 76 years, female 84.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 199.0
Pig sample Sample description nTPM
Midbrain
nTPM: 198.7
Samples: 4

Max nTPM: 323.1
Min nTPM: 138.3
Sample A Female 155.7
Sample B Female 138.3
Sample C Male 323.1
Sample D Male 177.7
Periaqueductal gray
nTPM: 121.9
Samples: 3

Max nTPM: 149.5
Min nTPM: 102.3
Sample B Female 114.0
Sample C Male 149.5
Sample D Male 102.3
Substantia nigra
nTPM: 175.3
Samples: 4

Max nTPM: 243.3
Min nTPM: 96.8
Sample A Female 243.3
Sample B Female 134.5
Sample C Male 226.5
Sample D Male 96.8
Superior colliculi
nTPM: 199.0
Samples: 4

Max nTPM: 252.0
Min nTPM: 150.9
Sample A Female 210.7
Sample B Female 150.9
Sample C Male 252.0
Sample D Male 182.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 403.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 403.5
Samples: 4

Max nTPM: 406.6
Min nTPM: 401.6
Sample A Male 402.6
Sample B Male 401.6
Sample C Female 406.6
Sample D Female 403.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.2
68667946 Antisense, RP_050203_01_B05, Mouse strain C57BL/6J (56 days, male) 14.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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