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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:121.5 nTPM
HPA:121.5 nTPM
GTEx:112.6 nTPM
FANTOM5:115.6 Scaled Tags Per Million
Pig:61.2 nTPM
Mouse:145.4 nTPM
Allen mouse:5.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 121.5
Sample id Sample description nTPM
Amygdala
nTPM: 118.7
2814 Male, age 76, right hemisphere 197.9
2514 Male, age 75, right hemisphere 116.1
2695 Female, age 67, right hemisphere 104.9
2517 Female, age 94, left hemisphere 100.6
1987 Female, age 91, left hemisphere 73.8
Basal amygdala
nTPM: 80.9
2685 Female, age 94, left hemisphere 104.6
2827 Female, age 67, right hemisphere 96.3
1955 Male, age 76, both hemispheres 95.2
2110 Male, age 80, left hemisphere 86.2
2609 Male, age 75, right hemisphere 64.9
2243 Female, age 91, right hemisphere 37.9
Central amygdala
nTPM: 93.9
1905 Male, age 76, both hemispheres 156.7
2701 Female, age 91, right hemisphere 104.3
2239 Male, age 80, left hemisphere 95.7
2515 Male, age 75, right hemisphere 60.4
2826 Female, age 94, left hemisphere 52.5
Corticomedial amygdala
nTPM: 58.5
2429 Female, age 94, left hemisphere 89.8
2535 Female, age 67, right hemisphere 72.5
2240 Male, age 76, both hemispheres 70.2
2428 Male, age 75, right hemisphere 64.1
2829 Male, age 80, left hemisphere 37.6
2242 Female, age 91, right hemisphere 16.6
Lateral amygdala
nTPM: 121.5
1883 Male, age 76, both hemispheres 165.3
2830 Female, age 67, right hemisphere 133.1
2256 Male, age 80, left hemisphere 120.7
2516 Male, age 75, right hemisphere 112.6
2255 Female, age 91, right hemisphere 109.1
2534 Female, age 94, left hemisphere 88.2
Stria terminalis, bed nucleus
nTPM: 57.7
2201 Male, age 74, unknown 68.6
1974 Female, age 91, both hemispheres 67.4
2486 Female, age 94, both hemispheres 37.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 112.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 112.6
Samples: 152

Max nTPM: 483.7
Min nTPM: 4.5
Std nTPM: 80.7
Median nTPM: 91.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 483.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 473.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 456.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 332.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 306.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 299.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 268.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 255.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 236.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 225.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 220.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 201.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 199.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 196.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 196.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 195.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 189.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 181.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 180.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 178.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 178.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 177.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 176.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 175.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 172.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 171.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 171.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 170.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 168.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 166.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 165.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 159.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 154.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 153.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 150.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 149.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 147.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 145.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 145.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 143.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 142.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 138.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 137.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 137.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 135.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 135.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 135.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 132.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 130.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 130.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 130.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 130.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 130.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 129.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 128.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 127.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 126.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 123.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 114.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 114.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 113.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 112.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 109.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 108.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 104.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 103.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 103.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 101.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 100.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 98.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 95.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 95.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 90.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 87.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 86.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 85.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 85.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 84.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 84.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 83.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 79.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 79.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 78.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 77.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 77.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 77.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 76.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 75.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 75.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 74.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 73.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 70.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 68.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 67.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 67.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 67.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 66.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 66.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 66.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 65.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 65.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 64.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 64.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 62.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 60.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 60.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 59.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 58.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 57.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 56.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 56.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 55.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 53.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 53.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 53.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 50.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 50.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 49.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 48.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 48.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 45.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 45.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 44.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 41.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 41.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 36.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 35.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 34.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 33.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 33.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 33.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 32.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 30.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 29.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 29.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 28.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 25.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 24.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 23.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 21.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 17.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 16.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 6.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 115.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 115.6
FF:10151-102I7 76 years, female 115.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.2
Pig sample Sample description nTPM
Amygdala
nTPM: 61.3
Samples: 4

Max nTPM: 95.5
Min nTPM: 34.8
Sample A Female 46.4
Sample B Female 95.5
Sample C Male 68.3
Sample D Male 34.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 145.4
Samples: 4

Max nTPM: 235.9
Min nTPM: 103.1
Sample A Male 118.0
Sample B Male 103.1
Sample C Female 235.9
Sample D Female 124.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.2
69736418 Antisense, RP_050503_04_G05, Mouse strain C57BL/6J (56 days, male) 5.2

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