MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:317.3 nTPM
HPA:317.3 nTPM
GTEx:276.7 nTPM
FANTOM5:658.6 Scaled Tags Per Million
Pig:306.9 nTPM
Mouse:622.0 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 317.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 209.6
2411 Female, age 72, unknown 303.1
1830 Male, age 51, unknown 295.7
1833 Male, age 53, unknown 278.1
2019 Male, age 18, unknown 270.4
1870 Female, age 42, unknown 248.1
2828 Female, age 72, unknown 199.5
2219 Male, age 76, both hemispheres 155.8
1827 Male, age 72, unknown 135.3
2666 Male, age 74, left hemisphere 114.8
2586 Male, age 75, left hemisphere 95.7
Dorsal raphe nucleus
nTPM: 152.0
2750 Male, age 76, both hemispheres 338.4
2016 Female, age 72, unknown 141.2
1828 Male, age 53, unknown 135.3
2047 Male, age 72, unknown 75.5
2298 Female, age 72, unknown 69.5
Inferior colliculus
nTPM: 124.8
2849 Male, age 72, unknown 140.1
1848 Female, age 42, unknown 136.5
1890 Male, age 53, unknown 131.5
2097 Female, age 72, unknown 91.1
Median raphe nucleus
nTPM: 135.5
2220 Male, age 76, midline 135.5
Pedunculopontine tegmental nucleus
nTPM: 228.0
2338 Male, age 61, both hemispheres 281.5
2334 Male, age 80, both hemispheres 238.8
1921 Female, age 85, both hemispheres 163.6
Periaquaductal grey, anterior
nTPM: 85.2
1947 Male, age 18, unknown 103.1
1795 Male, age 51, unknown 81.0
2502 Female, age 75, unknown 71.5
Periaquaductal grey, dorsal
nTPM: 75.6
2464 Female, age 72, unknown 142.7
1831 Male, age 72, unknown 86.0
2850 Male, age 76, both hemispheres 37.1
1840 Male, age 53, unknown 36.7
Periaquaductal grey, lateral
nTPM: 104.5
2272 Male, age 74, both hemispheres 166.9
2053 Male, age 18, unknown 101.2
2140 Male, age 76, both hemispheres 45.4
Pretectal area
nTPM: 121.6
2316 Male, age 76, right hemisphere 187.7
1815 Male, age 53, unknown 187.6
2407 Male, age 75, both hemispheres 173.2
1817 Female, age 42, unknown 137.1
2273 Male, age 74, both hemispheres 136.8
2007 Male, age 72, unknown 123.5
2825 Male, age 18, unknown 122.4
2224 Female, age 72, unknown 95.7
2667 Female, age 75, unknown 62.3
1944 Female, age 72, unknown 61.3
1816 Male, age 51, unknown 49.9
Red nucleus
nTPM: 317.3
2823 Male, age 76, right hemisphere 413.4
1904 Male, age 53, unknown 372.2
1865 Male, age 51, unknown 372.1
1821 Female, age 72, unknown 370.4
2227 Male, age 72, unknown 341.2
2769 Male, age 72, unknown 340.1
2725 Female, age 75, unknown 304.4
2785 Male, age 18, unknown 299.5
1954 Female, age 42, unknown 298.4
2503 Female, age 72, unknown 280.7
2588 Male, age 74, left hemisphere 221.3
2584 Male, age 75, left hemisphere 193.3
Substantia nigra
nTPM: 147.0
2590 Female, age 75, unknown 246.1
2583 Male, age 75, right hemisphere 191.6
1851 Male, age 51, unknown 177.1
1889 Female, age 72, unknown 169.9
2409 Female, age 72, unknown 159.5
2699 Male, age 18, unknown 145.0
1941 Male, age 53, unknown 120.0
1916 Female, age 42, unknown 103.7
2241 Male, age 72, unknown 95.7
2665 Male, age 74, both hemispheres 61.8
Superior colliculus
nTPM: 168.4
1995 Male, age 72, unknown 271.0
1913 Female, age 42, unknown 252.3
1895 Male, age 76, right hemisphere 245.6
2587 Male, age 74, left hemisphere 191.4
1839 Male, age 51, unknown 181.3
2668 Female, age 75, unknown 177.0
1796 Male, age 53, unknown 130.3
2087 Female, age 72, unknown 90.2
2261 Male, age 18, unknown 74.4
2664 Male, age 75, both hemispheres 70.7
Ventral tegmental area
nTPM: 196.5
2223 Female, age 72, unknown 369.8
2410 Female, age 72, unknown 237.6
2218 Male, age 76, both hemispheres 166.4
1942 Male, age 51, unknown 143.1
1915 Female, age 42, unknown 135.9
2021 Male, age 53, unknown 126.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 276.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 276.7
Samples: 139

Max nTPM: 1225.3
Min nTPM: 48.8
Std nTPM: 186.3
Median nTPM: 215.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1225.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 870.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 850.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 806.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 785.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 730.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 715.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 679.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 613.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 607.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 590.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 658.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 658.6
FF:10158-103A5 76 years, female 658.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 306.9
Pig sample Sample description nTPM
Midbrain
nTPM: 306.9
Samples: 4

Max nTPM: 694.5
Min nTPM: 135.4
Sample A Female 694.5
Sample B Female 241.8
Sample C Male 135.4
Sample D Male 155.8
Periaqueductal gray
nTPM: 156.7
Samples: 3

Max nTPM: 186.7
Min nTPM: 122.0
Sample B Female 186.7
Sample C Male 122.0
Sample D Male 161.5
Substantia nigra
nTPM: 285.7
Samples: 4

Max nTPM: 502.0
Min nTPM: 145.6
Sample A Female 278.8
Sample B Female 145.6
Sample C Male 216.3
Sample D Male 502.0
Superior colliculi
nTPM: 215.9
Samples: 4

Max nTPM: 278.8
Min nTPM: 90.3
Sample A Female 278.8
Sample B Female 90.3
Sample C Male 219.1
Sample D Male 275.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 622.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 622.0
Samples: 4

Max nTPM: 685.4
Min nTPM: 524.2
Sample A Male 603.2
Sample B Male 524.2
Sample C Female 675.2
Sample D Female 685.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
69736418 Antisense, RP_050503_04_G05, Mouse strain C57BL/6J (56 days, male) 12.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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