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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:247.8 nTPM
HPA:247.8 nTPM
GTEx:704.0 nTPM
FANTOM5:405.0 Scaled Tags Per Million
Pig:441.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 247.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 197.3
1981 Female, age 72, midline 257.7
2816 Male, age 47, midline 231.2
2194 Female, age 79, both hemispheres 218.9
2048 Male, age 55, midline 156.4
2565 Male, age 75, midline 122.1
Cervical spinal cord, dorsal horn
nTPM: 247.8
2296 Male, age 66, both hemispheres 501.9
2173 Female, age 72, unknown 364.3
2069 Male, age 47, both hemispheres 212.3
1877 Male, age 55, unknown 182.9
2721 Male, age 90, both hemispheres 119.9
2297 Male, age 75, both hemispheres 105.6
Cervical spinal cord, ventral horn
nTPM: 221.1
2068 Male, age 55, unknown 282.8
2820 Female, age 79, both hemispheres 264.2
2098 Female, age 72, unknown 220.7
2480 Male, age 75, both hemispheres 208.2
2809 Male, age 90, both hemispheres 188.3
2295 Male, age 66, both hemispheres 162.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 704.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 704.0
Samples: 159

Max nTPM: 1561.0
Min nTPM: 131.8
Std nTPM: 290.9
Median nTPM: 682.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1561.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1476.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1464.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1411.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1323.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1258.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1242.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1239.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1183.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1170.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1164.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1136.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1134.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1130.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1122.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1102.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1092.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1090.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1085.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1078.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1045.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1041.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1023.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1003.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 994.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 977.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 974.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 970.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 963.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 960.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 956.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 952.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 948.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 941.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 929.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 925.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 920.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 920.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 919.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 913.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 900.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 899.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 880.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 869.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 868.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 862.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 862.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 855.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 849.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 848.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 840.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 832.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 818.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 815.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 807.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 804.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 796.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 785.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 780.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 780.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 776.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 766.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 764.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 755.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 733.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 731.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 715.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 715.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 714.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 711.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 708.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 705.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 703.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 699.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 695.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 689.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 688.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 688.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 685.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 682.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 682.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 675.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 672.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 660.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 654.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 644.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 644.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 641.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 632.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 626.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 621.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 616.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 604.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 603.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 600.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 598.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 596.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 595.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 589.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 581.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 564.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 560.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 558.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 540.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 538.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 533.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 532.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 531.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 529.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 529.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 524.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 522.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 522.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 512.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 511.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 510.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 510.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 509.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 509.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 507.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 507.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 498.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 494.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 487.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 487.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 479.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 474.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 472.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 461.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 447.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 446.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 442.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 442.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 432.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 408.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 402.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 390.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 382.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 380.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 374.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 370.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 363.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 348.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 332.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 327.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 326.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 308.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 300.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 281.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 280.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 278.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 275.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 254.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 222.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 215.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 189.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 138.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 137.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 131.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 405.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 405.0
FF:10181-103D1 60 years, female 505.6
FF:10159-103A6 76 years, female 304.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 441.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 354.2
Samples: 4

Max nTPM: 401.5
Min nTPM: 288.2
Sample A Female 401.5
Sample B Female 348.9
Sample C Male 288.2
Sample D Male 378.0
Ventral spinal cord
nTPM: 441.0
Samples: 4

Max nTPM: 508.5
Min nTPM: 390.8
Sample A Female 472.0
Sample B Female 392.8
Sample C Male 390.8
Sample D Male 508.5

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