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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:205.4 nTPM
HPA:205.4 nTPM
GTEx:213.6 nTPM
FANTOM5:305.5 Scaled Tags Per Million
Pig:219.2 nTPM
Mouse:293.3 nTPM
Allen mouse:20.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 205.4
Sample id Sample description nTPM
Amygdala
nTPM: 125.2
1987 Female, age 91, left hemisphere 171.0
2517 Female, age 94, left hemisphere 155.2
2814 Male, age 76, right hemisphere 132.8
2514 Male, age 75, right hemisphere 100.8
2695 Female, age 67, right hemisphere 65.9
Basal amygdala
nTPM: 173.6
2243 Female, age 91, right hemisphere 234.0
2685 Female, age 94, left hemisphere 232.8
2110 Male, age 80, left hemisphere 183.6
1955 Male, age 76, both hemispheres 156.3
2827 Female, age 67, right hemisphere 118.1
2609 Male, age 75, right hemisphere 116.6
Central amygdala
nTPM: 164.1
2826 Female, age 94, left hemisphere 213.1
2239 Male, age 80, left hemisphere 186.3
2701 Female, age 91, right hemisphere 182.3
1905 Male, age 76, both hemispheres 133.0
2515 Male, age 75, right hemisphere 106.0
Corticomedial amygdala
nTPM: 176.1
2242 Female, age 91, right hemisphere 230.6
2829 Male, age 80, left hemisphere 214.9
2429 Female, age 94, left hemisphere 188.5
2535 Female, age 67, right hemisphere 162.1
2240 Male, age 76, both hemispheres 149.6
2428 Male, age 75, right hemisphere 110.7
Lateral amygdala
nTPM: 144.6
2534 Female, age 94, left hemisphere 243.9
2255 Female, age 91, right hemisphere 170.9
1883 Male, age 76, both hemispheres 152.2
2256 Male, age 80, left hemisphere 129.7
2516 Male, age 75, right hemisphere 95.6
2830 Female, age 67, right hemisphere 75.0
Stria terminalis, bed nucleus
nTPM: 205.4
1974 Female, age 91, both hemispheres 266.3
2486 Female, age 94, both hemispheres 194.8
2201 Male, age 74, unknown 155.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 213.6
Samples: 152

Max nTPM: 582.2
Min nTPM: 15.4
Std nTPM: 101.8
Median nTPM: 193.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 582.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 476.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 469.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 463.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 439.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 436.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 425.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 405.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 402.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 394.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 377.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 372.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 367.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 361.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 360.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 357.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 355.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 348.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 346.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 344.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 340.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 335.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 333.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 325.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 307.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 300.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 299.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 292.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 291.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 288.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 285.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 285.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 280.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 279.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 279.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 276.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 276.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 273.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 273.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 272.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 267.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 263.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 261.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 261.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 259.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 259.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 255.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 251.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 250.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 249.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 249.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 248.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 241.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 241.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 240.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 236.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 235.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 232.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 231.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 231.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 228.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 228.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 225.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 224.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 223.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 215.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 213.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 210.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 210.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 208.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 206.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 204.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 203.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 198.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 195.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 194.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 191.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 191.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 190.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 190.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 188.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 187.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 186.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 185.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 180.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 178.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 177.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 177.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 175.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 174.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 174.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 168.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 167.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 163.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 159.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 158.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 158.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 156.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 156.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 155.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 154.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 149.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 148.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 148.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 147.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 147.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 146.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 146.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 146.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 145.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 144.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 139.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 137.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 136.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 135.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 135.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 133.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 132.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 132.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 129.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 129.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 127.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 126.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 125.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 123.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 123.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 122.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 121.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 119.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 114.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 113.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 111.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 109.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 109.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 107.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 99.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 98.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 93.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 90.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 68.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 67.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 66.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 59.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 59.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 52.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 20.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 305.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 305.5
FF:10151-102I7 76 years, female 305.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 219.2
Pig sample Sample description nTPM
Amygdala
nTPM: 219.2
Samples: 4

Max nTPM: 348.9
Min nTPM: 128.9
Sample A Female 348.9
Sample B Female 128.9
Sample C Male 181.8
Sample D Male 217.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 293.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 293.3
Samples: 4

Max nTPM: 322.1
Min nTPM: 275.7
Sample A Male 322.1
Sample B Male 275.7
Sample C Female 290.3
Sample D Female 285.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 20.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.3
68843883 Antisense, RP_050217_02_E01, Mouse strain C57BL/6J (56 days, male) 20.3

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