MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:121.9 nTPM
HPA:121.9 nTPM
GTEx:95.9 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:253.3 nTPM
Mouse:291.2 nTPM
Allen mouse:16.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 121.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.4
2586 Male, age 75, left hemisphere 109.9
1827 Male, age 72, unknown 105.0
2219 Male, age 76, both hemispheres 103.5
2411 Female, age 72, unknown 101.3
2019 Male, age 18, unknown 100.4
2666 Male, age 74, left hemisphere 99.9
1870 Female, age 42, unknown 92.7
1833 Male, age 53, unknown 84.2
2828 Female, age 72, unknown 80.8
1830 Male, age 51, unknown 76.0
Dorsal raphe nucleus
nTPM: 96.7
2298 Female, age 72, unknown 126.1
2047 Male, age 72, unknown 102.2
1828 Male, age 53, unknown 93.7
2750 Male, age 76, both hemispheres 87.4
2016 Female, age 72, unknown 74.1
Inferior colliculus
nTPM: 96.9
2097 Female, age 72, unknown 112.1
2849 Male, age 72, unknown 97.6
1848 Female, age 42, unknown 95.9
1890 Male, age 53, unknown 82.0
Median raphe nucleus
nTPM: 110.1
2220 Male, age 76, midline 110.1
Pedunculopontine tegmental nucleus
nTPM: 97.1
1921 Female, age 85, both hemispheres 115.7
2334 Male, age 80, both hemispheres 99.8
2338 Male, age 61, both hemispheres 75.6
Periaquaductal grey, anterior
nTPM: 110.5
1795 Male, age 51, unknown 118.4
2502 Female, age 75, unknown 107.9
1947 Male, age 18, unknown 105.3
Periaquaductal grey, dorsal
nTPM: 93.7
1840 Male, age 53, unknown 106.1
2850 Male, age 76, both hemispheres 94.3
2464 Female, age 72, unknown 90.5
1831 Male, age 72, unknown 84.1
Periaquaductal grey, lateral
nTPM: 88.7
2272 Male, age 74, both hemispheres 90.4
2140 Male, age 76, both hemispheres 90.1
2053 Male, age 18, unknown 85.4
Pretectal area
nTPM: 121.9
1816 Male, age 51, unknown 163.7
2007 Male, age 72, unknown 156.4
1944 Female, age 72, unknown 149.3
1817 Female, age 42, unknown 142.8
2667 Female, age 75, unknown 132.2
2224 Female, age 72, unknown 131.3
1815 Male, age 53, unknown 123.9
2825 Male, age 18, unknown 98.6
2407 Male, age 75, both hemispheres 81.4
2273 Male, age 74, both hemispheres 80.4
2316 Male, age 76, right hemisphere 80.3
Red nucleus
nTPM: 70.9
2785 Male, age 18, unknown 102.3
2584 Male, age 75, left hemisphere 80.6
1821 Female, age 72, unknown 72.4
1954 Female, age 42, unknown 72.3
2769 Male, age 72, unknown 72.2
2227 Male, age 72, unknown 69.6
2503 Female, age 72, unknown 67.5
2588 Male, age 74, left hemisphere 65.1
1904 Male, age 53, unknown 64.6
1865 Male, age 51, unknown 62.3
2823 Male, age 76, right hemisphere 61.9
2725 Female, age 75, unknown 60.0
Substantia nigra
nTPM: 88.2
1889 Female, age 72, unknown 123.1
2665 Male, age 74, both hemispheres 104.8
1941 Male, age 53, unknown 101.3
1916 Female, age 42, unknown 97.1
2590 Female, age 75, unknown 85.8
1851 Male, age 51, unknown 83.5
2583 Male, age 75, right hemisphere 78.2
2241 Male, age 72, unknown 76.7
2409 Female, age 72, unknown 68.6
2699 Male, age 18, unknown 63.4
Superior colliculus
nTPM: 97.6
2087 Female, age 72, unknown 118.1
2261 Male, age 18, unknown 109.7
1796 Male, age 53, unknown 108.0
2668 Female, age 75, unknown 105.1
1895 Male, age 76, right hemisphere 100.7
2664 Male, age 75, both hemispheres 99.5
1839 Male, age 51, unknown 96.8
2587 Male, age 74, left hemisphere 84.2
1913 Female, age 42, unknown 79.6
1995 Male, age 72, unknown 74.6
Ventral tegmental area
nTPM: 94.0
2218 Male, age 76, both hemispheres 105.4
1915 Female, age 42, unknown 96.4
1942 Male, age 51, unknown 94.4
2410 Female, age 72, unknown 92.1
2223 Female, age 72, unknown 88.8
2021 Male, age 53, unknown 87.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.9
Samples: 139

Max nTPM: 412.0
Min nTPM: 17.0
Std nTPM: 61.6
Median nTPM: 78.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 412.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 293.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 234.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 225.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 212.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 207.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 205.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 203.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 200.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 195.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 195.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 253.3
Pig sample Sample description nTPM
Midbrain
nTPM: 234.0
Samples: 4

Max nTPM: 426.4
Min nTPM: 71.4
Sample A Female 71.4
Sample B Female 138.8
Sample C Male 426.4
Sample D Male 299.5
Periaqueductal gray
nTPM: 163.6
Samples: 3

Max nTPM: 218.2
Min nTPM: 130.1
Sample B Female 130.1
Sample C Male 218.2
Sample D Male 142.4
Substantia nigra
nTPM: 175.2
Samples: 4

Max nTPM: 270.3
Min nTPM: 60.0
Sample A Female 270.3
Sample B Female 115.0
Sample C Male 255.4
Sample D Male 60.0
Superior colliculi
nTPM: 253.3
Samples: 4

Max nTPM: 348.8
Min nTPM: 139.1
Sample A Female 279.0
Sample B Female 139.1
Sample C Male 348.8
Sample D Male 246.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 291.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 291.2
Samples: 4

Max nTPM: 297.0
Min nTPM: 288.6
Sample A Male 289.9
Sample B Male 288.6
Sample C Female 289.2
Sample D Female 297.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.9
68843883 Antisense, RP_050217_02_E01, Mouse strain C57BL/6J (56 days, male) 16.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.