MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.0 nTPM
HPA:67.0 nTPM
GTEx:77.1 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:125.0 nTPM
Mouse:166.9 nTPM
Allen mouse:16.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.2
2019 Male, age 18, unknown 157.1
2586 Male, age 75, left hemisphere 64.2
2666 Male, age 74, left hemisphere 38.6
2828 Female, age 72, unknown 36.7
1827 Male, age 72, unknown 33.2
2219 Male, age 76, both hemispheres 32.0
1830 Male, age 51, unknown 31.6
1833 Male, age 53, unknown 27.2
2411 Female, age 72, unknown 26.5
1870 Female, age 42, unknown 24.3
Dorsal raphe nucleus
nTPM: 24.9
1828 Male, age 53, unknown 44.1
2047 Male, age 72, unknown 29.2
2750 Male, age 76, both hemispheres 20.5
2016 Female, age 72, unknown 15.7
2298 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 50.1
2097 Female, age 72, unknown 63.0
1890 Male, age 53, unknown 58.6
1848 Female, age 42, unknown 45.5
2849 Male, age 72, unknown 33.4
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Pedunculopontine tegmental nucleus
nTPM: 36.8
2338 Male, age 61, both hemispheres 43.1
1921 Female, age 85, both hemispheres 35.4
2334 Male, age 80, both hemispheres 31.7
Periaquaductal grey, anterior
nTPM: 18.9
1795 Male, age 51, unknown 22.3
2502 Female, age 75, unknown 21.5
1947 Male, age 18, unknown 12.8
Periaquaductal grey, dorsal
nTPM: 18.3
2464 Female, age 72, unknown 27.2
1831 Male, age 72, unknown 26.1
2850 Male, age 76, both hemispheres 11.0
1840 Male, age 53, unknown 8.8
Periaquaductal grey, lateral
nTPM: 12.8
2272 Male, age 74, both hemispheres 13.8
2053 Male, age 18, unknown 12.4
2140 Male, age 76, both hemispheres 12.3
Pretectal area
nTPM: 67.0
2007 Male, age 72, unknown 148.4
1817 Female, age 42, unknown 147.9
1944 Female, age 72, unknown 122.5
1816 Male, age 51, unknown 114.9
1815 Male, age 53, unknown 69.7
2667 Female, age 75, unknown 45.8
2407 Male, age 75, both hemispheres 27.2
2316 Male, age 76, right hemisphere 21.5
2273 Male, age 74, both hemispheres 14.9
2825 Male, age 18, unknown 13.9
2224 Female, age 72, unknown 10.3
Red nucleus
nTPM: 64.2
2785 Male, age 18, unknown 157.2
2588 Male, age 74, left hemisphere 80.6
1821 Female, age 72, unknown 67.4
2823 Male, age 76, right hemisphere 63.6
2584 Male, age 75, left hemisphere 63.1
1865 Male, age 51, unknown 56.2
2503 Female, age 72, unknown 55.3
2769 Male, age 72, unknown 51.9
1954 Female, age 42, unknown 49.6
2227 Male, age 72, unknown 48.0
2725 Female, age 75, unknown 42.2
1904 Male, age 53, unknown 35.7
Substantia nigra
nTPM: 33.8
1889 Female, age 72, unknown 97.0
1941 Male, age 53, unknown 65.3
2583 Male, age 75, right hemisphere 40.4
2665 Male, age 74, both hemispheres 32.5
2590 Female, age 75, unknown 24.8
2409 Female, age 72, unknown 23.0
1851 Male, age 51, unknown 19.0
1916 Female, age 42, unknown 18.7
2699 Male, age 18, unknown 10.0
2241 Male, age 72, unknown 7.5
Superior colliculus
nTPM: 43.1
2087 Female, age 72, unknown 84.0
1895 Male, age 76, right hemisphere 53.1
2668 Female, age 75, unknown 52.6
1995 Male, age 72, unknown 46.6
1913 Female, age 42, unknown 43.9
2261 Male, age 18, unknown 38.1
1839 Male, age 51, unknown 32.6
2664 Male, age 75, both hemispheres 27.4
1796 Male, age 53, unknown 26.8
2587 Male, age 74, left hemisphere 26.3
Ventral tegmental area
nTPM: 19.5
2410 Female, age 72, unknown 33.7
2223 Female, age 72, unknown 21.8
1915 Female, age 42, unknown 21.4
2218 Male, age 76, both hemispheres 14.3
1942 Male, age 51, unknown 12.9
2021 Male, age 53, unknown 12.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.1
Samples: 139

Max nTPM: 537.5
Min nTPM: 14.7
Std nTPM: 62.5
Median nTPM: 56.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 537.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 293.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 278.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 239.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 196.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 185.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 172.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 168.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 167.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 164.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 161.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 125.0
Pig sample Sample description nTPM
Midbrain
nTPM: 67.2
Samples: 4

Max nTPM: 125.6
Min nTPM: 18.9
Sample A Female 23.2
Sample B Female 18.9
Sample C Male 125.6
Sample D Male 101.1
Periaqueductal gray
nTPM: 15.8
Samples: 3

Max nTPM: 18.0
Min nTPM: 11.7
Sample B Female 17.6
Sample C Male 18.0
Sample D Male 11.7
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 35.3
Min nTPM: 12.4
Sample A Female 32.3
Sample B Female 14.9
Sample C Male 12.4
Sample D Male 35.3
Superior colliculi
nTPM: 125.0
Samples: 4

Max nTPM: 197.0
Min nTPM: 62.4
Sample A Female 144.0
Sample B Female 62.4
Sample C Male 197.0
Sample D Male 96.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 166.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 166.9
Samples: 4

Max nTPM: 179.6
Min nTPM: 159.4
Sample A Male 179.6
Sample B Male 159.4
Sample C Female 165.6
Sample D Female 163.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.9
77454673 Antisense, RP_070129_01_C06, Mouse strain C57BL/6J (56 days, male) 16.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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