MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:63.1 nTPM
HPA:63.1 nTPM
GTEx:87.1 nTPM
FANTOM5:116.2 Scaled Tags Per Million
Pig:82.6 nTPM
Mouse:49.6 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.5
2586 Male, age 75, left hemisphere 70.5
2019 Male, age 18, unknown 56.2
2411 Female, age 72, unknown 55.9
1870 Female, age 42, unknown 51.6
1830 Male, age 51, unknown 49.4
2828 Female, age 72, unknown 49.0
1833 Male, age 53, unknown 46.8
2666 Male, age 74, left hemisphere 46.8
1827 Male, age 72, unknown 44.3
2219 Male, age 76, both hemispheres 34.1
Dorsal raphe nucleus
nTPM: 38.1
2750 Male, age 76, both hemispheres 50.2
1828 Male, age 53, unknown 40.0
2047 Male, age 72, unknown 35.5
2016 Female, age 72, unknown 34.3
2298 Female, age 72, unknown 30.5
Inferior colliculus
nTPM: 39.1
1848 Female, age 42, unknown 42.4
1890 Male, age 53, unknown 40.6
2097 Female, age 72, unknown 37.2
2849 Male, age 72, unknown 36.3
Median raphe nucleus
nTPM: 32.6
2220 Male, age 76, midline 32.6
Pedunculopontine tegmental nucleus
nTPM: 37.7
1921 Female, age 85, both hemispheres 44.3
2334 Male, age 80, both hemispheres 40.4
2338 Male, age 61, both hemispheres 28.3
Periaquaductal grey, anterior
nTPM: 42.5
1947 Male, age 18, unknown 45.6
2502 Female, age 75, unknown 42.6
1795 Male, age 51, unknown 39.4
Periaquaductal grey, dorsal
nTPM: 29.7
1831 Male, age 72, unknown 33.6
1840 Male, age 53, unknown 31.7
2464 Female, age 72, unknown 31.6
2850 Male, age 76, both hemispheres 21.8
Periaquaductal grey, lateral
nTPM: 28.0
2053 Male, age 18, unknown 34.7
2272 Male, age 74, both hemispheres 26.3
2140 Male, age 76, both hemispheres 23.2
Pretectal area
nTPM: 40.8
2007 Male, age 72, unknown 55.1
1817 Female, age 42, unknown 48.0
1944 Female, age 72, unknown 47.8
2407 Male, age 75, both hemispheres 47.7
1815 Male, age 53, unknown 45.4
1816 Male, age 51, unknown 44.1
2316 Male, age 76, right hemisphere 37.5
2825 Male, age 18, unknown 37.4
2667 Female, age 75, unknown 33.6
2224 Female, age 72, unknown 27.6
2273 Male, age 74, both hemispheres 24.3
Red nucleus
nTPM: 63.1
2588 Male, age 74, left hemisphere 81.1
2584 Male, age 75, left hemisphere 81.0
1904 Male, age 53, unknown 64.5
2769 Male, age 72, unknown 64.1
2823 Male, age 76, right hemisphere 63.5
2725 Female, age 75, unknown 62.0
2227 Male, age 72, unknown 60.9
2785 Male, age 18, unknown 59.1
1865 Male, age 51, unknown 58.2
1821 Female, age 72, unknown 57.6
2503 Female, age 72, unknown 53.4
1954 Female, age 42, unknown 52.2
Substantia nigra
nTPM: 49.5
2583 Male, age 75, right hemisphere 70.3
2590 Female, age 75, unknown 53.8
2665 Male, age 74, both hemispheres 53.4
1889 Female, age 72, unknown 51.6
1851 Male, age 51, unknown 51.3
2409 Female, age 72, unknown 49.8
1916 Female, age 42, unknown 49.2
1941 Male, age 53, unknown 43.0
2699 Male, age 18, unknown 37.7
2241 Male, age 72, unknown 34.6
Superior colliculus
nTPM: 45.5
1995 Male, age 72, unknown 50.0
2668 Female, age 75, unknown 48.7
2587 Male, age 74, left hemisphere 47.4
2087 Female, age 72, unknown 47.0
1895 Male, age 76, right hemisphere 46.6
1913 Female, age 42, unknown 46.5
1796 Male, age 53, unknown 43.1
1839 Male, age 51, unknown 42.7
2261 Male, age 18, unknown 41.6
2664 Male, age 75, both hemispheres 41.6
Ventral tegmental area
nTPM: 44.9
2410 Female, age 72, unknown 55.9
2223 Female, age 72, unknown 50.8
1942 Male, age 51, unknown 46.0
2218 Male, age 76, both hemispheres 39.4
1915 Female, age 42, unknown 39.2
2021 Male, age 53, unknown 38.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.1
Samples: 139

Max nTPM: 261.0
Min nTPM: 21.9
Std nTPM: 34.0
Median nTPM: 86.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 261.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 199.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 186.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 160.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 152.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 146.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 146.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 138.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 135.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 133.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 131.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.2
FF:10158-103A5 76 years, female 116.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.6
Pig sample Sample description nTPM
Midbrain
nTPM: 82.6
Samples: 4

Max nTPM: 112.9
Min nTPM: 48.6
Sample A Female 94.8
Sample B Female 48.6
Sample C Male 112.9
Sample D Male 74.2
Periaqueductal gray
nTPM: 43.0
Samples: 3

Max nTPM: 45.8
Min nTPM: 39.0
Sample B Female 44.1
Sample C Male 45.8
Sample D Male 39.0
Substantia nigra
nTPM: 57.4
Samples: 4

Max nTPM: 66.7
Min nTPM: 42.7
Sample A Female 66.7
Sample B Female 42.7
Sample C Male 58.6
Sample D Male 61.7
Superior colliculi
nTPM: 72.6
Samples: 4

Max nTPM: 94.0
Min nTPM: 46.1
Sample A Female 71.1
Sample B Female 46.1
Sample C Male 94.0
Sample D Male 79.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 53.9
Min nTPM: 46.8
Sample A Male 46.8
Sample B Male 49.3
Sample C Female 48.4
Sample D Female 53.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
74658055 Antisense, RP_060220_04_C10, Mouse strain C57BL/6J (56 days, male) 6.4
69548819 Antisense, RP_050426_02_D04, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.