MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:122.8 nTPM
HPA:122.8 nTPM
GTEx:105.8 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Pig:60.9 nTPM
Mouse:160.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.9
1870 Female, age 42, unknown 119.9
2411 Female, age 72, unknown 116.3
2219 Male, age 76, both hemispheres 116.2
1833 Male, age 53, unknown 114.6
2019 Male, age 18, unknown 114.0
1830 Male, age 51, unknown 112.8
1827 Male, age 72, unknown 111.5
2666 Male, age 74, left hemisphere 110.9
2586 Male, age 75, left hemisphere 107.0
2828 Female, age 72, unknown 106.1
Dorsal raphe nucleus
nTPM: 114.2
2298 Female, age 72, unknown 116.8
2750 Male, age 76, both hemispheres 116.2
2047 Male, age 72, unknown 113.4
1828 Male, age 53, unknown 113.0
2016 Female, age 72, unknown 111.7
Inferior colliculus
nTPM: 111.7
2097 Female, age 72, unknown 117.9
1848 Female, age 42, unknown 110.4
1890 Male, age 53, unknown 110.1
2849 Male, age 72, unknown 108.3
Median raphe nucleus
nTPM: 122.8
2220 Male, age 76, midline 122.8
Pedunculopontine tegmental nucleus
nTPM: 115.0
2334 Male, age 80, both hemispheres 119.5
1921 Female, age 85, both hemispheres 115.0
2338 Male, age 61, both hemispheres 110.7
Periaquaductal grey, anterior
nTPM: 112.7
1947 Male, age 18, unknown 120.0
2502 Female, age 75, unknown 109.1
1795 Male, age 51, unknown 109.0
Periaquaductal grey, dorsal
nTPM: 108.7
2850 Male, age 76, both hemispheres 113.0
1831 Male, age 72, unknown 108.9
1840 Male, age 53, unknown 107.0
2464 Female, age 72, unknown 106.0
Periaquaductal grey, lateral
nTPM: 108.6
2272 Male, age 74, both hemispheres 113.5
2053 Male, age 18, unknown 107.2
2140 Male, age 76, both hemispheres 105.2
Pretectal area
nTPM: 114.2
2667 Female, age 75, unknown 119.8
1817 Female, age 42, unknown 118.2
2007 Male, age 72, unknown 118.0
1815 Male, age 53, unknown 116.4
1944 Female, age 72, unknown 116.3
1816 Male, age 51, unknown 114.7
2224 Female, age 72, unknown 113.7
2273 Male, age 74, both hemispheres 111.5
2825 Male, age 18, unknown 111.3
2407 Male, age 75, both hemispheres 110.5
2316 Male, age 76, right hemisphere 105.5
Red nucleus
nTPM: 115.3
1821 Female, age 72, unknown 125.4
2725 Female, age 75, unknown 118.7
1954 Female, age 42, unknown 118.4
1865 Male, age 51, unknown 117.6
1904 Male, age 53, unknown 117.3
2503 Female, age 72, unknown 115.2
2785 Male, age 18, unknown 114.0
2227 Male, age 72, unknown 113.4
2588 Male, age 74, left hemisphere 112.6
2769 Male, age 72, unknown 112.3
2584 Male, age 75, left hemisphere 110.8
2823 Male, age 76, right hemisphere 108.3
Substantia nigra
nTPM: 117.1
2241 Male, age 72, unknown 128.0
1941 Male, age 53, unknown 122.4
1916 Female, age 42, unknown 120.6
1851 Male, age 51, unknown 117.6
2409 Female, age 72, unknown 117.5
1889 Female, age 72, unknown 117.0
2583 Male, age 75, right hemisphere 112.8
2699 Male, age 18, unknown 112.0
2590 Female, age 75, unknown 111.8
2665 Male, age 74, both hemispheres 111.2
Superior colliculus
nTPM: 110.8
2587 Male, age 74, left hemisphere 115.5
1839 Male, age 51, unknown 114.0
2087 Female, age 72, unknown 112.4
2261 Male, age 18, unknown 112.2
2668 Female, age 75, unknown 110.5
1913 Female, age 42, unknown 110.4
1796 Male, age 53, unknown 110.2
1895 Male, age 76, right hemisphere 109.1
1995 Male, age 72, unknown 107.8
2664 Male, age 75, both hemispheres 106.3
Ventral tegmental area
nTPM: 115.8
2223 Female, age 72, unknown 121.7
2410 Female, age 72, unknown 118.3
1915 Female, age 42, unknown 117.8
2218 Male, age 76, both hemispheres 115.2
1942 Male, age 51, unknown 112.1
2021 Male, age 53, unknown 109.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.8
Samples: 139

Max nTPM: 295.1
Min nTPM: 61.0
Std nTPM: 32.1
Median nTPM: 98.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 295.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 260.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 236.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 178.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 172.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 171.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 167.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 159.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 153.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 152.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 150.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.9
Pig sample Sample description nTPM
Midbrain
nTPM: 60.9
Samples: 4

Max nTPM: 65.3
Min nTPM: 53.9
Sample A Female 65.3
Sample B Female 53.9
Sample C Male 60.5
Sample D Male 63.9
Periaqueductal gray
nTPM: 51.4
Samples: 3

Max nTPM: 56.2
Min nTPM: 48.4
Sample B Female 49.7
Sample C Male 56.2
Sample D Male 48.4
Substantia nigra
nTPM: 56.2
Samples: 4

Max nTPM: 66.6
Min nTPM: 48.1
Sample A Female 66.6
Sample B Female 48.9
Sample C Male 61.2
Sample D Male 48.1
Superior colliculi
nTPM: 60.6
Samples: 4

Max nTPM: 66.5
Min nTPM: 51.9
Sample A Female 66.5
Sample B Female 51.9
Sample C Male 63.1
Sample D Male 60.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.4
Samples: 4

Max nTPM: 164.1
Min nTPM: 157.4
Sample A Male 157.4
Sample B Male 160.9
Sample C Female 164.1
Sample D Female 159.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.