BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.0 nTPM
HPA:42.0 nTPM
GTEx:39.0 nTPM
FANTOM5:97.2 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:42.0 nTPM
Allen mouse:3.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.9
2846 Female, age 79, unknown 51.6
2290 Female, age 72, unknown 43.6
2289 Male, age 61, right hemisphere 41.3
1857 Female, age 85, left hemisphere 39.4
1854 Male, age 80, left hemisphere 36.2
2288 Male, age 75, left hemisphere 34.2
1781 Male, age 74, unknown 34.1
2481 Female, age 94, left hemisphere 22.9
Claustrum
nTPM: 26.1
2645 Female, age 72, unknown 31.2
2568 Male, age 61, both hemispheres 30.2
2491 Male, age 75, both hemispheres 29.2
1956 Male, age 74, unknown 29.1
2284 Female, age 91, both hemispheres 27.3
2198 Male, age 80, both hemispheres 26.6
2392 Female, age 94, both hemispheres 23.7
2196 Female, age 79, unknown 22.0
2292 Female, age 85, both hemispheres 15.6
Globus pallidus, externus
nTPM: 13.1
2646 Male, age 61, right hemisphere 16.6
2395 Male, age 75, both hemispheres 14.4
2567 Female, age 72, unknown 12.5
2772 Female, age 79, unknown 11.2
1996 Male, age 80, right hemisphere 10.9
Globus pallidus, internus
nTPM: 11.6
2483 Female, age 94, right hemisphere 16.3
2566 Female, age 72, unknown 12.4
2287 Male, age 75, right hemisphere 11.7
1818 Male, age 74, unknown 11.1
2037 Male, age 80, right hemisphere 10.5
2778 Female, age 91, both hemispheres 10.1
2111 Female, age 85, right hemisphere 9.3
Nucleus accumbens
nTPM: 29.6
2824 Male, age 61, right hemisphere 40.4
1783 Male, age 74, unknown 38.8
1856 Female, age 91, right hemisphere 36.2
2286 Male, age 75, left hemisphere 30.1
1806 Female, age 85, left hemisphere 30.0
2698 Female, age 72, unknown 25.4
2391 Female, age 94, left hemisphere 21.6
2732 Male, age 80, right hemisphere 14.4
Nucleus basalis of Meynert
nTPM: 32.0
2484 Female, age 94, left hemisphere 40.3
2393 Male, age 80, right hemisphere 37.0
2821 Male, age 75, both hemispheres 30.9
2569 Male, age 61, both hemispheres 19.8
Nucleus of the diagonal band
nTPM: 28.1
2029 Male, age 61, right hemisphere 38.0
2775 Male, age 80, right hemisphere 31.3
1812 Female, age 91, both hemispheres 29.7
2195 Female, age 85, both hemispheres 27.9
1979 Male, age 74, unknown 13.9
Olfactory tubercle
nTPM: 33.6
2856 Male, age 75, right hemisphere 38.9
1998 Female, age 91, both hemispheres 35.5
2487 Female, age 94, left hemisphere 32.8
1846 Male, age 80, right hemisphere 27.2
Putamen
nTPM: 42.0
2489 Female, age 72, unknown 51.6
2466 Female, age 79, unknown 48.7
2647 Male, age 75, left hemisphere 47.9
1829 Male, age 74, unknown 46.1
1838 Male, age 80, right hemisphere 41.6
1937 Female, age 91, right hemisphere 32.0
2482 Female, age 94, left hemisphere 26.5
Septal nuclei
nTPM: 24.8
2031 Female, age 72, unknown 38.4
2629 Female, age 94, right hemisphere 38.4
1960 Male, age 74, unknown 28.0
2009 Female, age 91, both hemispheres 24.6
2059 Female, age 85, both hemispheres 19.7
2394 Male, age 61, left hemisphere 13.6
2199 Male, age 80, right hemisphere 10.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.0
Samples: 246

Max nTPM: 98.2
Min nTPM: 2.8
Std nTPM: 22.5
Median nTPM: 37.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 98.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 95.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 88.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 88.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 87.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 87.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 84.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 82.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 82.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 81.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 78.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.6
Samples: 246

Max nTPM: 101.8
Min nTPM: 1.7
Std nTPM: 19.9
Median nTPM: 39.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 101.8
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 82.4
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 78.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 77.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 76.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 74.1
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 70.7
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 70.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 69.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 68.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 68.7
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Brain - Putamen (basal ganglia)
Average nTPM: 37.7
Samples: 205

Max nTPM: 97.2
Min nTPM: 2.6
Std nTPM: 23.3
Median nTPM: 34.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 97.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 95.2
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 89.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 88.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 87.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 87.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 83.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 83.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 81.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 79.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 78.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.1
FF:10164-103B2 76 years, female 69.1
Globus pallidus
Scaled Tags Per Million: 24.9
FF:10175-103C4 60 years, female 29.2
FF:10161-103A8 76 years, female 20.5
Nucleus accumbens
Scaled Tags Per Million: 97.2
FF:10037-101F1 23-56 years, mixed 97.2
Putamen
Scaled Tags Per Million: 80.1
FF:10176-103C5 60 years, female 80.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.4
Pig sample Sample description nTPM
Caudate
nTPM: 18.4
Samples: 4

Max nTPM: 22.3
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 19.7
Sample C Male 22.3
Sample D Male 19.5
Putamen
nTPM: 17.1
Samples: 4

Max nTPM: 25.4
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 17.5
Sample C Male 25.4
Sample D Male 20.7
Septum
nTPM: 5.7
Samples: 4

Max nTPM: 9.3
Min nTPM: 2.1
Sample A Female 9.3
Sample B Female 7.0
Sample C Male 2.1
Sample D Male 4.3
Ventral pallidum
nTPM: 8.6
Samples: 4

Max nTPM: 11.8
Min nTPM: 4.0
Sample A Female 11.8
Sample B Female 8.1
Sample C Male 4.0
Sample D Male 10.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.0
Samples: 4

Max nTPM: 47.1
Min nTPM: 36.8
Sample A Male 41.2
Sample B Male 47.1
Sample C Female 36.8
Sample D Female 43.0
Septum
nTPM: 27.0
Samples: 4

Max nTPM: 34.0
Min nTPM: 23.8
Sample A Male 34.0
Sample B Male 23.9
Sample C Female 26.4
Sample D Female 23.8
Ventral forebrain
nTPM: 22.2
Samples: 4

Max nTPM: 23.5
Min nTPM: 21.2
Sample A Male 21.4
Sample B Male 22.7
Sample C Female 23.5
Sample D Female 21.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.8
81790700 Antisense, RP_090811_01_B08, Mouse strain C57BL/6J (56 days, male) 4.1
2191 Antisense, RP_040526_01_E02, Mouse strain C57BL/6J (56 days, male) 3.5
2192 Antisense, RP_040526_01_E02, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 2.6
2191 Antisense, RP_040526_01_E02, Mouse strain C57BL/6J (56 days, male) 3.0
81790700 Antisense, RP_090811_01_B08, Mouse strain C57BL/6J (56 days, male) 2.3
2192 Antisense, RP_040526_01_E02, Mouse strain C57BL/6J (56 days, male) 0.1

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