HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.7 nTPM
HPA:27.7 nTPM
GTEx:8.4 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:43.9 nTPM
Allen mouse:5.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.7
Sample id Sample description nTPM
Hippocampus
nTPM: 15.5
1898 Male, age 80, left hemisphere 19.0
1855 Male, age 76, left hemisphere 17.7
2621 Female, age 67, right hemisphere 16.1
2148 Female, age 91, left hemisphere 15.4
1911 Female, age 85, right hemisphere 12.5
2529 Female, age 94, left hemisphere 12.3
Dentate gyrus
nTPM: 15.0
1927 Female, age 91, both hemispheres 18.0
2010 Male, age 76, both hemispheres 16.8
2531 Female, age 67, both hemispheres 16.0
2530 Female, age 94, left hemisphere 13.7
2246 Female, age 85, both hemispheres 13.6
2528 Male, age 74, both hemispheres 12.1
Entorhinal gyrus
nTPM: 22.4
2764 Male, age 80, right hemisphere 28.0
2686 Male, age 75, right hemisphere 25.6
2613 Female, age 94, left hemisphere 24.5
1938 Female, age 85, left hemisphere 20.9
1787 Male, age 76, left hemisphere 18.4
2117 Female, age 91, right hemisphere 17.1
Hippocampus, CA1
nTPM: 14.4
2045 Male, age 76, both hemispheres 17.2
1873 Female, age 85, both hemispheres 14.8
2082 Female, age 91, right hemisphere 14.0
2749 Male, age 80, left hemisphere 14.0
2527 Male, age 74, both hemispheres 12.0
Hippocampus, CA2
nTPM: 15.4
1940 Female, age 85, left hemisphere 19.3
1892 Male, age 76, both hemispheres 17.7
2437 Female, age 94, left hemisphere 16.2
1963 Male, age 80, left hemisphere 14.1
2113 Female, age 91, right hemisphere 14.0
2249 Male, age 74, both hemispheres 11.2
Hippocampus, CA3
nTPM: 14.8
2620 Female, age 94, left hemisphere 19.8
2861 Female, age 67, both hemispheres 17.9
1867 Male, age 76, both hemispheres 14.4
2436 Male, age 74, both hemispheres 12.4
2137 Male, age 80, left hemisphere 12.3
1891 Female, age 85, both hemispheres 12.0
Parahippocampal cortex
nTPM: 24.6
2532 Female, age 72, left hemisphere 37.3
2622 Female, age 67, right hemisphere 34.6
2693 Female, age 94, both hemispheres 32.6
1850 Male, age 80, both hemispheres 30.6
2245 Female, age 91, both hemispheres 25.2
1933 Female, age 85, both hemispheres 23.6
1990 Female, age 91, right hemisphere 17.3
2018 Male, age 76, both hemispheres 17.0
2692 Male, age 74, both hemispheres 14.1
2250 Female, age 67, right hemisphere 13.9
Perirhinal gyrus
nTPM: 27.7
1794 Male, age 80, right hemisphere 33.1
2848 Male, age 76, right hemisphere 32.4
1841 Female, age 85, right hemisphere 30.5
2521 Female, age 94, right hemisphere 21.7
1847 Female, age 91, left hemisphere 20.7
Subiculum
nTPM: 14.3
2619 Male, age 74, both hemispheres 17.1
1977 Female, age 85, both hemispheres 15.6
2042 Male, age 76, both hemispheres 15.2
2729 Female, age 91, right hemisphere 13.2
1901 Male, age 80, both hemispheres 12.8
2438 Female, age 94, left hemisphere 11.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.4
Samples: 197

Max nTPM: 53.8
Min nTPM: 0.0
Std nTPM: 8.4
Median nTPM: 6.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 53.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 46.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 44.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 43.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 37.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 34.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 33.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 33.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 28.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 25.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 24.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.3
FF:10153-102I9 76 years, female 17.9
FF:10169-103B7 60 years, female 14.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.6
Samples: 4

Max nTPM: 8.5
Min nTPM: 2.1
Sample A Female 8.5
Sample B Female 6.6
Sample C Male 5.0
Sample D Male 2.1
Entorhinal cortex
nTPM: 10.3
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.1
Sample A Female 10.4
Sample B Female 8.1
Sample C Male 10.9
Sample D Male 11.6
Subiculum
nTPM: 3.6
Samples: 4

Max nTPM: 6.3
Min nTPM: 2.1
Sample A Female 6.3
Sample B Female 2.3
Sample C Male 3.6
Sample D Male 2.1
Ventral hippocampus
nTPM: 5.0
Samples: 4

Max nTPM: 9.6
Min nTPM: 2.4
Sample A Female 4.2
Sample B Female 2.4
Sample C Male 3.8
Sample D Male 9.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 43.9
Samples: 4

Max nTPM: 51.6
Min nTPM: 35.5
Sample A Male 47.4
Sample B Male 51.6
Sample C Female 35.5
Sample D Female 41.2
Hippocampal formation
nTPM: 33.8
Samples: 4

Max nTPM: 37.4
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 37.4
Sample C Female 33.1
Sample D Female 33.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.4
81790700 Antisense, RP_090811_01_B08, Mouse strain C57BL/6J (56 days, male) 5.4
2191 Antisense, RP_040526_01_E02, Mouse strain C57BL/6J (56 days, male) 5.4
2192 Antisense, RP_040526_01_E02, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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