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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:321.4 nTPM
HPA:321.4 nTPM
GTEx:363.2 nTPM
FANTOM5:92.3 Scaled Tags Per Million
Pig:72.3 nTPM
Mouse:405.9 nTPM
Allen mouse:25.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 321.4
Sample id Sample description nTPM
Amygdala
nTPM: 321.4
2814 Male, age 76, right hemisphere 335.3
1987 Female, age 91, left hemisphere 326.8
2514 Male, age 75, right hemisphere 326.2
2695 Female, age 67, right hemisphere 318.6
2517 Female, age 94, left hemisphere 300.1
Basal amygdala
nTPM: 294.5
2110 Male, age 80, left hemisphere 309.6
1955 Male, age 76, both hemispheres 307.8
2609 Male, age 75, right hemisphere 307.3
2243 Female, age 91, right hemisphere 295.3
2685 Female, age 94, left hemisphere 284.3
2827 Female, age 67, right hemisphere 263.0
Central amygdala
nTPM: 309.1
1905 Male, age 76, both hemispheres 334.0
2515 Male, age 75, right hemisphere 322.5
2826 Female, age 94, left hemisphere 300.2
2239 Male, age 80, left hemisphere 298.6
2701 Female, age 91, right hemisphere 290.3
Corticomedial amygdala
nTPM: 299.8
2428 Male, age 75, right hemisphere 325.2
2829 Male, age 80, left hemisphere 313.3
2429 Female, age 94, left hemisphere 300.1
2242 Female, age 91, right hemisphere 299.6
2240 Male, age 76, both hemispheres 291.1
2535 Female, age 67, right hemisphere 269.7
Lateral amygdala
nTPM: 300.7
1883 Male, age 76, both hemispheres 321.7
2516 Male, age 75, right hemisphere 319.5
2534 Female, age 94, left hemisphere 306.4
2255 Female, age 91, right hemisphere 296.4
2256 Male, age 80, left hemisphere 291.4
2830 Female, age 67, right hemisphere 268.8
Stria terminalis, bed nucleus
nTPM: 313.6
1974 Female, age 91, both hemispheres 332.4
2201 Male, age 74, unknown 304.3
2486 Female, age 94, both hemispheres 304.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 363.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 363.2
Samples: 152

Max nTPM: 1259.2
Min nTPM: 176.7
Std nTPM: 150.0
Median nTPM: 339.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1259.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 964.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 958.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 929.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 772.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 694.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 673.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 641.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 605.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 579.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 575.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 575.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 503.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 503.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 496.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 483.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 472.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 461.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 457.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 450.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 446.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 441.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 439.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 436.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 434.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 433.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 427.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 426.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 421.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 413.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 408.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 404.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 401.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 398.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 394.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 394.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 393.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 390.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 389.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 389.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 388.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 386.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 380.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 379.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 379.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 378.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 377.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 374.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 374.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 373.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 370.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 370.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 369.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 367.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 367.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 365.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 365.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 364.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 364.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 363.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 360.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 360.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 358.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 357.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 356.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 355.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 354.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 351.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 350.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 349.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 349.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 345.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 342.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 342.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 341.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 341.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 338.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 332.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 328.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 328.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 327.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 326.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 323.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 322.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 319.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 319.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 318.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 317.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 316.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 316.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 315.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 315.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 311.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 311.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 310.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 310.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 309.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 308.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 308.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 307.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 306.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 306.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 304.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 302.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 302.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 300.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 295.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 294.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 291.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 289.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 289.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 287.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 287.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 284.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 283.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 283.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 281.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 277.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 274.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 273.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 272.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 271.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 267.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 267.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 263.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 257.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 255.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 254.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 251.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 247.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 246.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 244.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 242.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 236.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 236.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 234.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 234.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 228.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 224.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 220.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 217.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 214.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 211.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 209.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 203.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 200.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 196.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 192.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 188.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 180.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 177.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 176.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 92.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 92.3
FF:10151-102I7 76 years, female 92.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 72.3
Pig sample Sample description nTPM
Amygdala
nTPM: 72.3
Samples: 4

Max nTPM: 86.4
Min nTPM: 60.5
Sample A Female 86.4
Sample B Female 75.5
Sample C Male 66.9
Sample D Male 60.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 405.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 405.9
Samples: 4

Max nTPM: 468.9
Min nTPM: 371.5
Sample A Male 400.6
Sample B Male 371.5
Sample C Female 468.9
Sample D Female 382.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 25.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.2
69262287 Antisense, RP_050303_01_F04, Mouse strain C57BL/6J (56 days, male) 28.5
74272036 Antisense, RP_060202_01_A03, Mouse strain C57BL/6J (56 days, male) 22.0

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