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CHCHD2
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:354.6 nTPM
HPA:354.6 nTPM
GTEx:292.8 nTPM
FANTOM5:129.1 Scaled Tags Per Million
Pig:132.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 354.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 341.6
1981 Female, age 72, midline 405.2
2194 Female, age 79, both hemispheres 333.2
2565 Male, age 75, midline 329.8
2048 Male, age 55, midline 323.1
2816 Male, age 47, midline 316.6
Cervical spinal cord, dorsal horn
nTPM: 354.6
2173 Female, age 72, unknown 419.8
2069 Male, age 47, both hemispheres 374.7
2296 Male, age 66, both hemispheres 369.5
2297 Male, age 75, both hemispheres 330.8
1877 Male, age 55, unknown 325.0
2721 Male, age 90, both hemispheres 308.0
Cervical spinal cord, ventral horn
nTPM: 346.3
2098 Female, age 72, unknown 402.3
2809 Male, age 90, both hemispheres 363.5
2068 Male, age 55, unknown 342.1
2480 Male, age 75, both hemispheres 341.9
2295 Male, age 66, both hemispheres 331.5
2820 Female, age 79, both hemispheres 296.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 292.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 292.8
Samples: 159

Max nTPM: 520.4
Min nTPM: 151.9
Std nTPM: 57.5
Median nTPM: 289.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 520.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 482.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 475.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 473.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 459.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 419.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 414.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 398.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 391.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 381.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 378.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 376.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 375.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 368.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 365.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 365.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 364.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 361.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 359.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 357.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 357.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 350.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 346.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 345.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 344.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 342.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 340.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 339.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 339.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 335.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 329.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 329.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 322.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 321.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 321.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 320.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 319.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 319.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 318.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 317.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 316.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 312.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 311.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 311.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 310.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 310.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 310.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 308.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 308.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 307.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 306.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 306.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 305.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 304.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 304.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 304.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 302.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 302.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 302.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 301.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 301.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 300.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 300.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 299.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 298.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 296.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 296.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 295.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 294.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 294.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 294.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 294.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 294.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 293.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 293.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 291.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 291.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 291.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 290.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 289.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 288.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 283.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 282.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 282.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 282.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 281.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 280.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 280.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 276.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 276.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 276.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 275.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 273.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 273.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 271.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 271.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 270.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 269.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 269.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 267.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 267.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 266.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 266.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 266.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 266.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 265.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 264.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 262.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 262.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 261.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 261.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 260.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 260.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 258.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 258.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 256.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 256.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 256.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 255.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 253.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 252.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 250.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 249.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 249.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 249.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 247.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 247.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 246.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 245.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 244.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 243.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 239.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 239.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 238.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 237.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 237.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 236.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 236.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 235.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 233.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 233.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 232.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 231.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 229.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 229.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 229.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 228.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 228.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 226.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 223.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 221.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 220.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 216.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 215.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 214.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 212.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 200.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 198.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 151.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 129.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 129.1
FF:10181-103D1 60 years, female 174.9
FF:10159-103A6 76 years, female 83.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 132.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 116.6
Samples: 4

Max nTPM: 143.9
Min nTPM: 100.7
Sample A Female 100.7
Sample B Female 121.1
Sample C Male 143.9
Sample D Male 100.7
Ventral spinal cord
nTPM: 132.6
Samples: 4

Max nTPM: 158.6
Min nTPM: 108.9
Sample A Female 108.9
Sample B Female 158.6
Sample C Male 140.7
Sample D Male 122.1

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