MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:341.5 nTPM
HPA:341.5 nTPM
GTEx:395.8 nTPM
FANTOM5:121.6 Scaled Tags Per Million
Pig:141.6 nTPM
Mouse:264.1 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 341.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 315.3
2411 Female, age 72, unknown 340.3
2019 Male, age 18, unknown 334.2
2828 Female, age 72, unknown 326.2
1827 Male, age 72, unknown 322.9
1870 Female, age 42, unknown 315.0
1833 Male, age 53, unknown 312.8
2219 Male, age 76, both hemispheres 311.3
1830 Male, age 51, unknown 304.5
2586 Male, age 75, left hemisphere 297.1
2666 Male, age 74, left hemisphere 288.8
Dorsal raphe nucleus
nTPM: 341.5
2298 Female, age 72, unknown 389.7
2047 Male, age 72, unknown 343.0
1828 Male, age 53, unknown 329.0
2016 Female, age 72, unknown 322.9
2750 Male, age 76, both hemispheres 322.9
Inferior colliculus
nTPM: 329.8
2097 Female, age 72, unknown 366.7
1890 Male, age 53, unknown 327.0
1848 Female, age 42, unknown 322.3
2849 Male, age 72, unknown 303.1
Median raphe nucleus
nTPM: 326.0
2220 Male, age 76, midline 326.0
Pedunculopontine tegmental nucleus
nTPM: 323.1
2334 Male, age 80, both hemispheres 334.4
1921 Female, age 85, both hemispheres 330.8
2338 Male, age 61, both hemispheres 303.9
Periaquaductal grey, anterior
nTPM: 328.3
1795 Male, age 51, unknown 332.9
2502 Female, age 75, unknown 332.0
1947 Male, age 18, unknown 319.9
Periaquaductal grey, dorsal
nTPM: 314.1
1840 Male, age 53, unknown 321.8
2464 Female, age 72, unknown 320.1
2850 Male, age 76, both hemispheres 315.1
1831 Male, age 72, unknown 299.4
Periaquaductal grey, lateral
nTPM: 321.1
2272 Male, age 74, both hemispheres 335.6
2140 Male, age 76, both hemispheres 318.5
2053 Male, age 18, unknown 309.0
Pretectal area
nTPM: 333.6
2273 Male, age 74, both hemispheres 354.4
2007 Male, age 72, unknown 349.5
1817 Female, age 42, unknown 348.2
2224 Female, age 72, unknown 341.1
1816 Male, age 51, unknown 338.6
2667 Female, age 75, unknown 336.0
1944 Female, age 72, unknown 333.6
1815 Male, age 53, unknown 327.7
2316 Male, age 76, right hemisphere 326.1
2825 Male, age 18, unknown 310.5
2407 Male, age 75, both hemispheres 303.9
Red nucleus
nTPM: 322.9
2503 Female, age 72, unknown 344.6
1821 Female, age 72, unknown 342.5
1954 Female, age 42, unknown 330.9
2769 Male, age 72, unknown 329.4
2227 Male, age 72, unknown 328.9
2785 Male, age 18, unknown 328.9
1904 Male, age 53, unknown 325.7
2725 Female, age 75, unknown 320.7
1865 Male, age 51, unknown 319.8
2823 Male, age 76, right hemisphere 319.6
2588 Male, age 74, left hemisphere 299.0
2584 Male, age 75, left hemisphere 284.6
Substantia nigra
nTPM: 332.3
1916 Female, age 42, unknown 381.1
1851 Male, age 51, unknown 353.3
1889 Female, age 72, unknown 338.8
2241 Male, age 72, unknown 338.3
1941 Male, age 53, unknown 334.4
2699 Male, age 18, unknown 330.6
2590 Female, age 75, unknown 322.5
2409 Female, age 72, unknown 321.0
2583 Male, age 75, right hemisphere 303.3
2665 Male, age 74, both hemispheres 299.8
Superior colliculus
nTPM: 319.3
2261 Male, age 18, unknown 335.1
1796 Male, age 53, unknown 334.6
2087 Female, age 72, unknown 331.6
2668 Female, age 75, unknown 320.3
2587 Male, age 74, left hemisphere 319.4
1995 Male, age 72, unknown 313.4
1913 Female, age 42, unknown 313.2
1895 Male, age 76, right hemisphere 311.8
1839 Male, age 51, unknown 309.5
2664 Male, age 75, both hemispheres 304.5
Ventral tegmental area
nTPM: 336.0
2410 Female, age 72, unknown 361.1
1915 Female, age 42, unknown 346.0
2218 Male, age 76, both hemispheres 340.3
1942 Male, age 51, unknown 328.0
2223 Female, age 72, unknown 321.9
2021 Male, age 53, unknown 318.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 395.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 395.8
Samples: 139

Max nTPM: 735.8
Min nTPM: 190.0
Std nTPM: 95.7
Median nTPM: 385.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 735.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 621.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 620.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 616.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 598.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 596.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 569.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 561.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 556.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 555.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 554.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.6
FF:10158-103A5 76 years, female 121.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 141.6
Pig sample Sample description nTPM
Midbrain
nTPM: 122.7
Samples: 4

Max nTPM: 145.4
Min nTPM: 104.9
Sample A Female 145.4
Sample B Female 116.9
Sample C Male 123.5
Sample D Male 104.9
Periaqueductal gray
nTPM: 98.2
Samples: 3

Max nTPM: 108.4
Min nTPM: 90.1
Sample B Female 96.1
Sample C Male 108.4
Sample D Male 90.1
Substantia nigra
nTPM: 115.4
Samples: 4

Max nTPM: 156.5
Min nTPM: 84.1
Sample A Female 156.5
Sample B Female 112.0
Sample C Male 109.1
Sample D Male 84.1
Superior colliculi
nTPM: 141.6
Samples: 4

Max nTPM: 160.9
Min nTPM: 109.3
Sample A Female 153.5
Sample B Female 160.9
Sample C Male 142.6
Sample D Male 109.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 264.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 264.0
Samples: 4

Max nTPM: 290.4
Min nTPM: 232.4
Sample A Male 290.4
Sample B Male 263.1
Sample C Female 232.4
Sample D Female 270.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
69262287 Antisense, RP_050303_01_F04, Mouse strain C57BL/6J (56 days, male) 22.2
74272036 Antisense, RP_060202_01_A03, Mouse strain C57BL/6J (56 days, male) 18.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.