MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:838.7 nTPM
HPA:838.7 nTPM
GTEx:613.9 nTPM
FANTOM5:970.7 Scaled Tags Per Million
Pig:214.4 nTPM
Mouse:6.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 838.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 782.1
2666 Male, age 74, left hemisphere 867.1
2828 Female, age 72, unknown 838.7
2586 Male, age 75, left hemisphere 796.9
2019 Male, age 18, unknown 779.5
1827 Male, age 72, unknown 777.4
2219 Male, age 76, both hemispheres 763.9
1830 Male, age 51, unknown 753.0
2411 Female, age 72, unknown 753.0
1833 Male, age 53, unknown 748.4
1870 Female, age 42, unknown 743.1
Dorsal raphe nucleus
nTPM: 809.4
2047 Male, age 72, unknown 854.2
2298 Female, age 72, unknown 819.5
2016 Female, age 72, unknown 815.8
1828 Male, age 53, unknown 815.7
2750 Male, age 76, both hemispheres 741.9
Inferior colliculus
nTPM: 751.6
2849 Male, age 72, unknown 771.2
1848 Female, age 42, unknown 752.9
1890 Male, age 53, unknown 752.0
2097 Female, age 72, unknown 730.2
Median raphe nucleus
nTPM: 801.1
2220 Male, age 76, midline 801.1
Pedunculopontine tegmental nucleus
nTPM: 801.9
2334 Male, age 80, both hemispheres 873.6
2338 Male, age 61, both hemispheres 797.7
1921 Female, age 85, both hemispheres 734.4
Periaquaductal grey, anterior
nTPM: 804.9
1795 Male, age 51, unknown 849.8
1947 Male, age 18, unknown 792.2
2502 Female, age 75, unknown 772.8
Periaquaductal grey, dorsal
nTPM: 805.0
2850 Male, age 76, both hemispheres 924.3
1831 Male, age 72, unknown 766.6
1840 Male, age 53, unknown 765.5
2464 Female, age 72, unknown 763.6
Periaquaductal grey, lateral
nTPM: 838.7
2140 Male, age 76, both hemispheres 934.5
2272 Male, age 74, both hemispheres 796.1
2053 Male, age 18, unknown 785.5
Pretectal area
nTPM: 813.9
2007 Male, age 72, unknown 843.2
1817 Female, age 42, unknown 836.5
2407 Male, age 75, both hemispheres 828.5
1944 Female, age 72, unknown 824.0
2667 Female, age 75, unknown 822.3
2316 Male, age 76, right hemisphere 816.4
1816 Male, age 51, unknown 813.4
2273 Male, age 74, both hemispheres 809.6
2224 Female, age 72, unknown 797.2
2825 Male, age 18, unknown 789.6
1815 Male, age 53, unknown 772.1
Red nucleus
nTPM: 778.9
2725 Female, age 75, unknown 860.2
2785 Male, age 18, unknown 821.0
2503 Female, age 72, unknown 809.8
2769 Male, age 72, unknown 785.1
2227 Male, age 72, unknown 784.3
2823 Male, age 76, right hemisphere 776.7
1865 Male, age 51, unknown 775.0
1954 Female, age 42, unknown 767.1
1821 Female, age 72, unknown 763.2
1904 Male, age 53, unknown 747.7
2584 Male, age 75, left hemisphere 735.0
2588 Male, age 74, left hemisphere 721.6
Substantia nigra
nTPM: 791.7
1941 Male, age 53, unknown 838.5
1851 Male, age 51, unknown 836.3
1889 Female, age 72, unknown 817.2
2699 Male, age 18, unknown 812.0
1916 Female, age 42, unknown 808.1
2409 Female, age 72, unknown 782.5
2590 Female, age 75, unknown 772.6
2583 Male, age 75, right hemisphere 765.3
2665 Male, age 74, both hemispheres 757.7
2241 Male, age 72, unknown 727.2
Superior colliculus
nTPM: 785.5
1796 Male, age 53, unknown 855.6
2664 Male, age 75, both hemispheres 818.9
2087 Female, age 72, unknown 787.6
2261 Male, age 18, unknown 787.5
1995 Male, age 72, unknown 780.3
1913 Female, age 42, unknown 771.1
1895 Male, age 76, right hemisphere 769.8
1839 Male, age 51, unknown 768.4
2587 Male, age 74, left hemisphere 764.5
2668 Female, age 75, unknown 751.5
Ventral tegmental area
nTPM: 788.9
2021 Male, age 53, unknown 810.2
1915 Female, age 42, unknown 809.8
2410 Female, age 72, unknown 800.7
2218 Male, age 76, both hemispheres 781.9
2223 Female, age 72, unknown 776.7
1942 Male, age 51, unknown 754.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 613.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 613.9
Samples: 139

Max nTPM: 7956.5
Min nTPM: 60.8
Std nTPM: 1009.6
Median nTPM: 310.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 7956.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 6141.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 5358.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3291.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 2668.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1903.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1877.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1691.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 1649.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1631.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1626.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 970.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 970.7
FF:10158-103A5 76 years, female 970.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 214.4
Pig sample Sample description nTPM
Midbrain
nTPM: 190.2
Samples: 4

Max nTPM: 271.3
Min nTPM: 139.9
Sample A Female 271.3
Sample B Female 165.8
Sample C Male 183.8
Sample D Male 139.9
Periaqueductal gray
nTPM: 168.2
Samples: 3

Max nTPM: 180.5
Min nTPM: 159.2
Sample B Female 164.9
Sample C Male 180.5
Sample D Male 159.2
Substantia nigra
nTPM: 208.6
Samples: 4

Max nTPM: 301.0
Min nTPM: 136.9
Sample A Female 301.0
Sample B Female 197.0
Sample C Male 199.5
Sample D Male 136.9
Superior colliculi
nTPM: 214.4
Samples: 4

Max nTPM: 267.9
Min nTPM: 151.9
Sample A Female 263.0
Sample B Female 267.9
Sample C Male 151.9
Sample D Male 174.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.6
Sample A Male 6.0
Sample B Male 5.6
Sample C Female 5.9
Sample D Female 6.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74363357 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
73514683 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.