BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.1 nTPM
HPA:62.1 nTPM
GTEx:96.2 nTPM
FANTOM5:12.4 Scaled Tags Per Million
Pig:70.0 nTPM
Mouse:161.6 nTPM
Allen mouse:1.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 57.2
2481 Female, age 94, left hemisphere 65.2
2290 Female, age 72, unknown 62.1
2289 Male, age 61, right hemisphere 60.7
1854 Male, age 80, left hemisphere 56.6
1857 Female, age 85, left hemisphere 55.5
2288 Male, age 75, left hemisphere 53.7
1781 Male, age 74, unknown 52.8
2846 Female, age 79, unknown 50.9
Claustrum
nTPM: 47.6
2196 Female, age 79, unknown 49.5
2491 Male, age 75, both hemispheres 49.3
2198 Male, age 80, both hemispheres 49.1
1956 Male, age 74, unknown 47.5
2645 Female, age 72, unknown 47.4
2284 Female, age 91, both hemispheres 47.3
2392 Female, age 94, both hemispheres 46.6
2568 Male, age 61, both hemispheres 46.1
2292 Female, age 85, both hemispheres 45.3
Globus pallidus, externus
nTPM: 62.1
1996 Male, age 80, right hemisphere 75.8
2646 Male, age 61, right hemisphere 65.9
2772 Female, age 79, unknown 63.0
2567 Female, age 72, unknown 53.7
2395 Male, age 75, both hemispheres 52.4
Globus pallidus, internus
nTPM: 59.5
2037 Male, age 80, right hemisphere 65.8
1818 Male, age 74, unknown 62.5
2483 Female, age 94, right hemisphere 61.6
2778 Female, age 91, both hemispheres 60.5
2287 Male, age 75, right hemisphere 58.9
2111 Female, age 85, right hemisphere 54.5
2566 Female, age 72, unknown 52.9
Nucleus accumbens
nTPM: 53.4
2732 Male, age 80, right hemisphere 64.2
1806 Female, age 85, left hemisphere 55.6
2286 Male, age 75, left hemisphere 53.8
2698 Female, age 72, unknown 53.7
2391 Female, age 94, left hemisphere 51.5
1783 Male, age 74, unknown 49.8
1856 Female, age 91, right hemisphere 49.4
2824 Male, age 61, right hemisphere 48.8
Nucleus basalis of Meynert
nTPM: 57.2
2569 Male, age 61, both hemispheres 67.4
2821 Male, age 75, both hemispheres 57.1
2484 Female, age 94, left hemisphere 52.3
2393 Male, age 80, right hemisphere 52.2
Nucleus of the diagonal band
nTPM: 52.3
1979 Male, age 74, unknown 65.1
1812 Female, age 91, both hemispheres 55.6
2775 Male, age 80, right hemisphere 47.9
2029 Male, age 61, right hemisphere 46.8
2195 Female, age 85, both hemispheres 46.0
Olfactory tubercle
nTPM: 48.5
2856 Male, age 75, right hemisphere 50.1
1846 Male, age 80, right hemisphere 50.0
2487 Female, age 94, left hemisphere 47.9
1998 Female, age 91, both hemispheres 45.9
Putamen
nTPM: 51.3
2482 Female, age 94, left hemisphere 54.6
2647 Male, age 75, left hemisphere 53.4
2489 Female, age 72, unknown 52.5
1937 Female, age 91, right hemisphere 50.4
1838 Male, age 80, right hemisphere 50.1
2466 Female, age 79, unknown 49.5
1829 Male, age 74, unknown 48.3
Septal nuclei
nTPM: 55.6
2199 Male, age 80, right hemisphere 71.8
2009 Female, age 91, both hemispheres 58.3
2629 Female, age 94, right hemisphere 58.1
2059 Female, age 85, both hemispheres 55.8
2394 Male, age 61, left hemisphere 52.6
2031 Female, age 72, unknown 46.9
1960 Male, age 74, unknown 45.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 96.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 96.2
Samples: 246

Max nTPM: 287.7
Min nTPM: 19.8
Std nTPM: 47.8
Median nTPM: 84.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 287.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 276.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 269.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 253.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 247.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 233.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 232.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 232.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 211.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 206.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 204.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 68.1
Samples: 246

Max nTPM: 344.6
Min nTPM: 17.9
Std nTPM: 41.8
Median nTPM: 56.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 344.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 288.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 209.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 203.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 189.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 170.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 152.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 150.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 145.7
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 145.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 143.7
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Brain - Putamen (basal ganglia)
Average nTPM: 77.6
Samples: 205

Max nTPM: 301.8
Min nTPM: 22.3
Std nTPM: 38.7
Median nTPM: 68.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 301.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 197.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 196.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 193.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 178.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 168.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 165.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 165.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 155.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 148.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 144.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.4
FF:10164-103B2 76 years, female 12.4
Globus pallidus
Scaled Tags Per Million: 10.9
FF:10161-103A8 76 years, female 14.8
FF:10175-103C4 60 years, female 7.1
Nucleus accumbens
Scaled Tags Per Million: 8.0
FF:10037-101F1 23-56 years, mixed 8.0
Putamen
Scaled Tags Per Million: 7.3
FF:10176-103C5 60 years, female 7.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 70.0
Pig sample Sample description nTPM
Caudate
nTPM: 70.0
Samples: 4

Max nTPM: 89.1
Min nTPM: 59.0
Sample A Female 59.0
Sample B Female 62.5
Sample C Male 89.1
Sample D Male 69.3
Putamen
nTPM: 51.1
Samples: 4

Max nTPM: 62.1
Min nTPM: 31.9
Sample A Female 62.1
Sample B Female 31.9
Sample C Male 54.8
Sample D Male 55.4
Septum
nTPM: 49.9
Samples: 4

Max nTPM: 56.6
Min nTPM: 44.6
Sample A Female 45.8
Sample B Female 52.6
Sample C Male 56.6
Sample D Male 44.6
Ventral pallidum
nTPM: 46.8
Samples: 4

Max nTPM: 61.7
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 61.7
Sample C Male 48.2
Sample D Male 44.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 161.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.6
Samples: 4

Max nTPM: 59.6
Min nTPM: 49.0
Sample A Male 59.6
Sample B Male 51.2
Sample C Female 49.0
Sample D Female 54.7
Septum
nTPM: 161.6
Samples: 4

Max nTPM: 185.7
Min nTPM: 98.0
Sample A Male 98.0
Sample B Male 180.0
Sample C Female 182.6
Sample D Female 185.7
Ventral forebrain
nTPM: 19.2
Samples: 4

Max nTPM: 21.6
Min nTPM: 14.1
Sample A Male 14.1
Sample B Male 21.6
Sample C Female 20.6
Sample D Female 20.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
75077281 Antisense, RP_060412_02_E12, Mouse strain C57BL/6J (56 days, male) 2.1
68920749 Antisense, RP_050303_01_B06, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 1.1
75077281 Antisense, RP_060412_02_E12, Mouse strain C57BL/6J (56 days, male) 1.6
68920749 Antisense, RP_050303_01_B06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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