MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:156.9 nTPM
HPA:156.9 nTPM
GTEx:182.4 nTPM
FANTOM5:93.2 Scaled Tags Per Million
Pig:207.9 nTPM
Mouse:191.0 nTPM
Allen mouse:15.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 156.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 153.6
2586 Male, age 75, left hemisphere 169.8
2019 Male, age 18, unknown 165.1
2411 Female, age 72, unknown 159.9
2666 Male, age 74, left hemisphere 159.9
1827 Male, age 72, unknown 156.1
1870 Female, age 42, unknown 155.3
2828 Female, age 72, unknown 152.7
1830 Male, age 51, unknown 147.2
1833 Male, age 53, unknown 143.9
2219 Male, age 76, both hemispheres 126.2
Dorsal raphe nucleus
nTPM: 144.5
2750 Male, age 76, both hemispheres 149.2
2298 Female, age 72, unknown 147.6
1828 Male, age 53, unknown 146.6
2047 Male, age 72, unknown 139.7
2016 Female, age 72, unknown 139.5
Inferior colliculus
nTPM: 146.4
2097 Female, age 72, unknown 152.6
1848 Female, age 42, unknown 147.0
1890 Male, age 53, unknown 143.8
2849 Male, age 72, unknown 142.3
Median raphe nucleus
nTPM: 135.1
2220 Male, age 76, midline 135.1
Pedunculopontine tegmental nucleus
nTPM: 139.2
2334 Male, age 80, both hemispheres 147.4
1921 Female, age 85, both hemispheres 138.6
2338 Male, age 61, both hemispheres 131.5
Periaquaductal grey, anterior
nTPM: 145.4
2502 Female, age 75, unknown 147.5
1795 Male, age 51, unknown 145.5
1947 Male, age 18, unknown 143.2
Periaquaductal grey, dorsal
nTPM: 137.5
1840 Male, age 53, unknown 141.5
1831 Male, age 72, unknown 140.2
2464 Female, age 72, unknown 137.5
2850 Male, age 76, both hemispheres 130.7
Periaquaductal grey, lateral
nTPM: 134.9
2053 Male, age 18, unknown 138.4
2140 Male, age 76, both hemispheres 134.4
2272 Male, age 74, both hemispheres 131.9
Pretectal area
nTPM: 150.1
2007 Male, age 72, unknown 164.9
1817 Female, age 42, unknown 164.5
1816 Male, age 51, unknown 163.2
1815 Male, age 53, unknown 159.2
1944 Female, age 72, unknown 151.2
2667 Female, age 75, unknown 146.6
2825 Male, age 18, unknown 145.1
2407 Male, age 75, both hemispheres 143.4
2273 Male, age 74, both hemispheres 138.9
2316 Male, age 76, right hemisphere 138.6
2224 Female, age 72, unknown 135.6
Red nucleus
nTPM: 156.9
1821 Female, age 72, unknown 171.4
2588 Male, age 74, left hemisphere 164.6
2785 Male, age 18, unknown 160.6
1954 Female, age 42, unknown 157.6
1865 Male, age 51, unknown 157.3
2584 Male, age 75, left hemisphere 155.9
1904 Male, age 53, unknown 155.8
2769 Male, age 72, unknown 155.6
2227 Male, age 72, unknown 155.5
2503 Female, age 72, unknown 152.6
2823 Male, age 76, right hemisphere 149.2
2725 Female, age 75, unknown 147.1
Substantia nigra
nTPM: 149.1
2583 Male, age 75, right hemisphere 161.5
1889 Female, age 72, unknown 158.4
2590 Female, age 75, unknown 154.1
1851 Male, age 51, unknown 153.0
2665 Male, age 74, both hemispheres 152.8
1916 Female, age 42, unknown 151.9
1941 Male, age 53, unknown 150.3
2241 Male, age 72, unknown 140.5
2699 Male, age 18, unknown 134.9
2409 Female, age 72, unknown 133.9
Superior colliculus
nTPM: 151.1
2664 Male, age 75, both hemispheres 157.2
2668 Female, age 75, unknown 155.8
2261 Male, age 18, unknown 154.2
1895 Male, age 76, right hemisphere 151.3
2087 Female, age 72, unknown 150.7
1995 Male, age 72, unknown 150.6
1796 Male, age 53, unknown 150.1
1913 Female, age 42, unknown 149.4
2587 Male, age 74, left hemisphere 146.3
1839 Male, age 51, unknown 145.1
Ventral tegmental area
nTPM: 145.9
2410 Female, age 72, unknown 156.6
2223 Female, age 72, unknown 156.0
1915 Female, age 42, unknown 147.1
2021 Male, age 53, unknown 141.2
1942 Male, age 51, unknown 139.9
2218 Male, age 76, both hemispheres 134.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 182.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 182.4
Samples: 139

Max nTPM: 282.8
Min nTPM: 141.4
Std nTPM: 26.6
Median nTPM: 178.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 282.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 277.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 256.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 253.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 239.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 231.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 230.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 229.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 227.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 224.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 222.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.2
FF:10158-103A5 76 years, female 93.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 207.9
Pig sample Sample description nTPM
Midbrain
nTPM: 207.9
Samples: 4

Max nTPM: 273.8
Min nTPM: 178.5
Sample A Female 273.8
Sample B Female 178.5
Sample C Male 195.1
Sample D Male 184.1
Periaqueductal gray
nTPM: 167.7
Samples: 3

Max nTPM: 183.6
Min nTPM: 152.5
Sample B Female 167.1
Sample C Male 183.6
Sample D Male 152.5
Substantia nigra
nTPM: 179.8
Samples: 4

Max nTPM: 209.8
Min nTPM: 147.9
Sample A Female 209.8
Sample B Female 147.9
Sample C Male 183.7
Sample D Male 177.7
Superior colliculi
nTPM: 197.4
Samples: 4

Max nTPM: 223.7
Min nTPM: 154.0
Sample A Female 223.7
Sample B Female 154.0
Sample C Male 210.3
Sample D Male 201.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 191.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 191.0
Samples: 4

Max nTPM: 196.6
Min nTPM: 185.0
Sample A Male 196.6
Sample B Male 186.0
Sample C Female 196.2
Sample D Female 185.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.8
513227 Antisense, RP_040810_01_C03, Mouse strain C57BL/6J (56 days, male) 15.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.