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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:401.9 nTPM
HPA:401.9 nTPM
GTEx:477.6 nTPM
FANTOM5:383.5 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:238.4 nTPM
Allen mouse:9.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 401.9
Sample id Sample description nTPM
Amygdala
nTPM: 401.1
2814 Male, age 76, right hemisphere 409.7
2695 Female, age 67, right hemisphere 406.4
2514 Male, age 75, right hemisphere 406.0
1987 Female, age 91, left hemisphere 394.1
2517 Female, age 94, left hemisphere 389.2
Basal amygdala
nTPM: 401.9
2243 Female, age 91, right hemisphere 411.2
2609 Male, age 75, right hemisphere 410.5
2827 Female, age 67, right hemisphere 399.5
1955 Male, age 76, both hemispheres 399.0
2685 Female, age 94, left hemisphere 397.2
2110 Male, age 80, left hemisphere 394.0
Central amygdala
nTPM: 396.6
2826 Female, age 94, left hemisphere 403.2
2239 Male, age 80, left hemisphere 398.0
2701 Female, age 91, right hemisphere 397.8
1905 Male, age 76, both hemispheres 397.7
2515 Male, age 75, right hemisphere 386.4
Corticomedial amygdala
nTPM: 399.2
2242 Female, age 91, right hemisphere 406.2
2829 Male, age 80, left hemisphere 401.0
2240 Male, age 76, both hemispheres 400.4
2535 Female, age 67, right hemisphere 400.2
2429 Female, age 94, left hemisphere 397.5
2428 Male, age 75, right hemisphere 390.1
Lateral amygdala
nTPM: 393.3
1883 Male, age 76, both hemispheres 399.6
2534 Female, age 94, left hemisphere 399.4
2516 Male, age 75, right hemisphere 399.1
2830 Female, age 67, right hemisphere 395.1
2255 Female, age 91, right hemisphere 383.8
2256 Male, age 80, left hemisphere 382.7
Stria terminalis, bed nucleus
nTPM: 396.3
1974 Female, age 91, both hemispheres 405.1
2486 Female, age 94, both hemispheres 392.3
2201 Male, age 74, unknown 391.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 477.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 477.6
Samples: 152

Max nTPM: 1252.1
Min nTPM: 244.3
Std nTPM: 141.1
Median nTPM: 453.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1252.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1124.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1002.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 866.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 859.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 840.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 807.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 680.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 677.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 661.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 652.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 625.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 620.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 612.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 609.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 607.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 600.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 595.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 594.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 587.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 584.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 583.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 576.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 573.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 564.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 559.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 556.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 553.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 544.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 542.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 540.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 528.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 526.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 525.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 524.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 521.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 516.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 515.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 514.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 512.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 510.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 510.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 504.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 504.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 502.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 502.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 500.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 500.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 499.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 498.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 495.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 493.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 492.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 491.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 488.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 486.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 485.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 484.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 484.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 483.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 480.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 478.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 478.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 477.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 476.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 473.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 472.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 472.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 469.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 462.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 459.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 458.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 457.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 454.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 454.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 453.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 453.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 453.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 452.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 451.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 450.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 449.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 449.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 446.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 444.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 444.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 442.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 441.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 440.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 440.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 437.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 433.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 432.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 431.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 431.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 429.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 429.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 426.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 422.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 421.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 417.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 416.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 415.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 413.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 413.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 411.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 404.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 403.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 402.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 400.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 399.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 397.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 396.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 394.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 394.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 393.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 387.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 386.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 384.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 380.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 378.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 377.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 377.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 375.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 372.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 372.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 370.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 367.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 363.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 362.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 359.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 357.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 355.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 353.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 352.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 347.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 345.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 344.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 333.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 332.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 331.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 330.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 328.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 322.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 320.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 319.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 319.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 312.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 304.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 298.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 254.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 244.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 383.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 383.5
FF:10151-102I7 76 years, female 383.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.7
Pig sample Sample description nTPM
Amygdala
nTPM: 45.7
Samples: 4

Max nTPM: 64.9
Min nTPM: 37.5
Sample A Female 64.9
Sample B Female 37.5
Sample C Male 41.8
Sample D Male 38.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 238.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 238.4
Samples: 4

Max nTPM: 268.7
Min nTPM: 227.2
Sample A Male 228.1
Sample B Male 229.4
Sample C Female 268.7
Sample D Female 227.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.7
68117986 Antisense, RP_040929_01_H04, Mouse strain C57BL/6J (56 days, male) 9.7

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