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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1849.2 nTPM
HPA:1849.2 nTPM
GTEx:2456.2 nTPM
FANTOM5:2723.9 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1849.2
Sample id Sample description nTPM
Amygdala
nTPM: 1849.2
2814 Male, age 76, right hemisphere 2125.3
2695 Female, age 67, right hemisphere 1907.5
2514 Male, age 75, right hemisphere 1783.9
1987 Female, age 91, left hemisphere 1751.3
2517 Female, age 94, left hemisphere 1677.9
Basal amygdala
nTPM: 1629.9
2609 Male, age 75, right hemisphere 1910.7
1955 Male, age 76, both hemispheres 1808.2
2110 Male, age 80, left hemisphere 1648.9
2685 Female, age 94, left hemisphere 1506.5
2243 Female, age 91, right hemisphere 1498.6
2827 Female, age 67, right hemisphere 1406.5
Central amygdala
nTPM: 1810.4
1905 Male, age 76, both hemispheres 2092.6
2515 Male, age 75, right hemisphere 1859.2
2826 Female, age 94, left hemisphere 1771.6
2239 Male, age 80, left hemisphere 1701.6
2701 Female, age 91, right hemisphere 1627.2
Corticomedial amygdala
nTPM: 1551.8
2428 Male, age 75, right hemisphere 1646.0
2240 Male, age 76, both hemispheres 1644.2
2429 Female, age 94, left hemisphere 1592.3
2829 Male, age 80, left hemisphere 1566.3
2242 Female, age 91, right hemisphere 1462.7
2535 Female, age 67, right hemisphere 1399.0
Lateral amygdala
nTPM: 1773.2
2516 Male, age 75, right hemisphere 2013.4
1883 Male, age 76, both hemispheres 1974.0
2256 Male, age 80, left hemisphere 1805.3
2534 Female, age 94, left hemisphere 1704.1
2255 Female, age 91, right hemisphere 1674.8
2830 Female, age 67, right hemisphere 1467.5
Stria terminalis, bed nucleus
nTPM: 1436.2
2201 Male, age 74, unknown 1472.1
1974 Female, age 91, both hemispheres 1463.0
2486 Female, age 94, both hemispheres 1373.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2456.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2456.2
Samples: 152

Max nTPM: 5882.6
Min nTPM: 71.6
Std nTPM: 964.9
Median nTPM: 2386.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 5882.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 5301.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4901.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4811.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 4634.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 4620.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4462.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 4431.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 4208.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 4141.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 3999.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3988.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3939.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3921.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3873.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3743.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3528.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 3515.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 3466.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 3460.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3442.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 3397.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3340.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 3296.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 3232.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3216.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3214.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 3214.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3198.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 3183.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 3127.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3089.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3065.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2976.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2964.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2963.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2963.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2961.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2925.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2923.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2894.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2873.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2847.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2836.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2835.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2817.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2807.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2791.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2790.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2771.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2767.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2767.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2747.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2746.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2733.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2733.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2705.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2679.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2672.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2668.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2657.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2616.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2597.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2592.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 2571.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2564.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 2558.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2522.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2497.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2492.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2479.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2453.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2413.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2412.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2410.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2386.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2386.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2382.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2361.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 2343.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2338.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2298.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2296.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 2292.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2282.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2280.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2231.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2195.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2180.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2158.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2143.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2134.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2123.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2116.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2094.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2071.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 2026.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1981.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1979.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1950.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1947.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1929.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1911.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1904.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1891.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1873.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1834.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1827.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1820.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1817.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1812.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1810.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1804.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1785.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1781.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1711.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1708.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1703.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1696.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1694.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1689.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1679.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1677.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1662.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1625.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1610.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1595.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1579.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1576.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1461.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1455.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1436.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1416.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1407.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1381.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1336.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1333.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1292.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1250.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1249.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1210.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1189.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1184.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1173.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1155.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1071.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1042.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 962.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 931.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 748.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 733.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 71.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2723.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 2723.9
FF:10151-102I7 76 years, female 2723.9

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