MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2228.2 nTPM
HPA:2228.2 nTPM
GTEx:3385.0 nTPM
FANTOM5:6910.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2228.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1881.9
2019 Male, age 18, unknown 2090.3
2828 Female, age 72, unknown 2087.0
1833 Male, age 53, unknown 2014.1
1870 Female, age 42, unknown 2006.9
2411 Female, age 72, unknown 1984.0
1830 Male, age 51, unknown 1953.2
2586 Male, age 75, left hemisphere 1815.3
2219 Male, age 76, both hemispheres 1669.3
1827 Male, age 72, unknown 1655.1
2666 Male, age 74, left hemisphere 1543.8
Dorsal raphe nucleus
nTPM: 1837.3
2750 Male, age 76, both hemispheres 1973.1
2016 Female, age 72, unknown 1862.6
2298 Female, age 72, unknown 1808.0
1828 Male, age 53, unknown 1799.8
2047 Male, age 72, unknown 1743.1
Inferior colliculus
nTPM: 1743.7
1890 Male, age 53, unknown 1756.7
1848 Female, age 42, unknown 1755.6
2849 Male, age 72, unknown 1742.9
2097 Female, age 72, unknown 1719.5
Median raphe nucleus
nTPM: 1779.2
2220 Male, age 76, midline 1779.2
Pedunculopontine tegmental nucleus
nTPM: 1832.1
2334 Male, age 80, both hemispheres 1867.9
1921 Female, age 85, both hemispheres 1845.9
2338 Male, age 61, both hemispheres 1782.5
Periaquaductal grey, anterior
nTPM: 1686.5
1947 Male, age 18, unknown 1704.7
2502 Female, age 75, unknown 1685.7
1795 Male, age 51, unknown 1669.1
Periaquaductal grey, dorsal
nTPM: 1687.3
2850 Male, age 76, both hemispheres 1769.6
2464 Female, age 72, unknown 1728.2
1831 Male, age 72, unknown 1680.3
1840 Male, age 53, unknown 1571.1
Periaquaductal grey, lateral
nTPM: 1754.4
2140 Male, age 76, both hemispheres 1821.3
2053 Male, age 18, unknown 1729.3
2272 Male, age 74, both hemispheres 1712.7
Pretectal area
nTPM: 1845.0
2667 Female, age 75, unknown 2142.3
1817 Female, age 42, unknown 1974.9
2316 Male, age 76, right hemisphere 1910.1
1815 Male, age 53, unknown 1907.2
2273 Male, age 74, both hemispheres 1897.2
1944 Female, age 72, unknown 1829.7
2407 Male, age 75, both hemispheres 1810.0
2007 Male, age 72, unknown 1800.5
2224 Female, age 72, unknown 1708.9
2825 Male, age 18, unknown 1677.2
1816 Male, age 51, unknown 1636.7
Red nucleus
nTPM: 2228.2
1904 Male, age 53, unknown 2460.2
2823 Male, age 76, right hemisphere 2414.9
2769 Male, age 72, unknown 2400.1
2227 Male, age 72, unknown 2386.9
1865 Male, age 51, unknown 2370.7
1821 Female, age 72, unknown 2328.6
2503 Female, age 72, unknown 2288.1
1954 Female, age 42, unknown 2270.4
2785 Male, age 18, unknown 2243.8
2725 Female, age 75, unknown 1953.9
2588 Male, age 74, left hemisphere 1868.2
2584 Male, age 75, left hemisphere 1752.5
Substantia nigra
nTPM: 1761.1
1889 Female, age 72, unknown 1972.2
1851 Male, age 51, unknown 1930.0
2699 Male, age 18, unknown 1915.5
2583 Male, age 75, right hemisphere 1796.6
2590 Female, age 75, unknown 1782.8
1916 Female, age 42, unknown 1777.6
2409 Female, age 72, unknown 1759.6
1941 Male, age 53, unknown 1622.2
2241 Male, age 72, unknown 1581.3
2665 Male, age 74, both hemispheres 1473.2
Superior colliculus
nTPM: 1841.4
1995 Male, age 72, unknown 2212.5
1913 Female, age 42, unknown 2064.9
2087 Female, age 72, unknown 1852.4
1796 Male, age 53, unknown 1834.1
2587 Male, age 74, left hemisphere 1831.0
1895 Male, age 76, right hemisphere 1823.2
1839 Male, age 51, unknown 1787.7
2668 Female, age 75, unknown 1725.6
2664 Male, age 75, both hemispheres 1648.3
2261 Male, age 18, unknown 1634.7
Ventral tegmental area
nTPM: 1836.1
2223 Female, age 72, unknown 1927.5
2410 Female, age 72, unknown 1910.6
1915 Female, age 42, unknown 1890.7
2021 Male, age 53, unknown 1775.1
2218 Male, age 76, both hemispheres 1768.7
1942 Male, age 51, unknown 1743.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3385.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3385.0
Samples: 139

Max nTPM: 8971.8
Min nTPM: 768.5
Std nTPM: 1329.7
Median nTPM: 3172.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 8971.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 7758.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 6933.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6679.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6662.5
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 6623.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6380.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 6085.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5770.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 5646.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 5550.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6910.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6910.2
FF:10158-103A5 76 years, female 6910.2

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