We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PTGDS
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PTGDS
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1999.6 nTPM
HPA:1999.6 nTPM
GTEx:3430.7 nTPM
FANTOM5:6644.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1999.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1999.6
1981 Female, age 72, midline 2213.4
2194 Female, age 79, both hemispheres 2010.3
2048 Male, age 55, midline 1984.4
2816 Male, age 47, midline 1983.8
2565 Male, age 75, midline 1806.2
Cervical spinal cord, dorsal horn
nTPM: 1970.1
2296 Male, age 66, both hemispheres 2414.2
2173 Female, age 72, unknown 2233.3
2069 Male, age 47, both hemispheres 1964.7
1877 Male, age 55, unknown 1896.4
2721 Male, age 90, both hemispheres 1757.7
2297 Male, age 75, both hemispheres 1554.5
Cervical spinal cord, ventral horn
nTPM: 1983.0
2098 Female, age 72, unknown 2545.1
2068 Male, age 55, unknown 2061.6
2295 Male, age 66, both hemispheres 1971.0
2820 Female, age 79, both hemispheres 1869.3
2809 Male, age 90, both hemispheres 1798.3
2480 Male, age 75, both hemispheres 1652.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3430.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 3430.7
Samples: 159

Max nTPM: 16604.8
Min nTPM: 944.1
Std nTPM: 1500.7
Median nTPM: 3217.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 16604.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 9894.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 6004.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 5634.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 5470.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 5443.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 5179.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 5141.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 5111.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 5060.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 4819.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 4744.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 4686.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4667.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 4648.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 4647.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 4637.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 4627.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4566.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4539.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 4504.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 4452.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 4438.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 4437.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 4422.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4412.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 4315.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 4297.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4223.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 4188.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 4187.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 4148.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 4113.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 4091.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 4062.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 4053.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 4046.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3989.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 3979.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 3976.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 3964.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 3959.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 3950.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 3908.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3891.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3887.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 3872.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3833.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3818.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3786.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3786.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 3739.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 3699.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3686.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3682.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3666.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 3659.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3629.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3618.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 3579.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 3546.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3531.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 3504.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3480.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3447.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3444.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 3439.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3430.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3425.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 3410.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3397.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3371.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 3354.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3316.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 3315.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 3302.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 3262.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3227.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 3224.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 3217.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 3209.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3209.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 3187.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3184.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3180.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 3177.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 3152.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 3146.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 3139.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3098.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 3087.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 3057.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 3046.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3027.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3024.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3020.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 3019.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2993.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 2988.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2968.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 2967.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2963.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2931.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2922.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 2890.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2884.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 2858.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2850.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2842.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2840.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2753.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2745.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2744.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2743.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2716.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2696.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2696.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2692.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 2690.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2679.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2655.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 2627.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 2626.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2588.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2552.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2549.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2539.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2482.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 2472.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2456.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 2449.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 2449.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2423.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2404.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 2402.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2371.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2323.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2317.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2226.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2216.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2160.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2130.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 2128.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 2052.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 2036.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1996.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1980.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1977.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1975.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1914.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1825.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1800.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1730.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1683.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1647.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1561.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1544.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1491.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 944.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 6644.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 6644.4
FF:10181-103D1 60 years, female 8924.2
FF:10159-103A6 76 years, female 4364.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.