MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.7 nTPM
HPA:37.7 nTPM
GTEx:53.7 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:14.7 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.5
2586 Male, age 75, left hemisphere 48.9
2828 Female, age 72, unknown 43.5
2666 Male, age 74, left hemisphere 37.4
1827 Male, age 72, unknown 36.7
2219 Male, age 76, both hemispheres 34.8
2411 Female, age 72, unknown 33.4
2019 Male, age 18, unknown 33.0
1830 Male, age 51, unknown 32.9
1833 Male, age 53, unknown 32.5
1870 Female, age 42, unknown 32.2
Dorsal raphe nucleus
nTPM: 32.9
1828 Male, age 53, unknown 34.9
2750 Male, age 76, both hemispheres 33.1
2047 Male, age 72, unknown 32.7
2298 Female, age 72, unknown 32.5
2016 Female, age 72, unknown 31.2
Inferior colliculus
nTPM: 32.0
1890 Male, age 53, unknown 34.0
2097 Female, age 72, unknown 31.7
1848 Female, age 42, unknown 31.2
2849 Male, age 72, unknown 31.0
Median raphe nucleus
nTPM: 29.5
2220 Male, age 76, midline 29.5
Pedunculopontine tegmental nucleus
nTPM: 29.0
1921 Female, age 85, both hemispheres 32.5
2334 Male, age 80, both hemispheres 31.4
2338 Male, age 61, both hemispheres 23.2
Periaquaductal grey, anterior
nTPM: 37.7
2502 Female, age 75, unknown 41.9
1795 Male, age 51, unknown 37.9
1947 Male, age 18, unknown 33.2
Periaquaductal grey, dorsal
nTPM: 30.0
2464 Female, age 72, unknown 32.5
1840 Male, age 53, unknown 30.5
1831 Male, age 72, unknown 29.1
2850 Male, age 76, both hemispheres 28.0
Periaquaductal grey, lateral
nTPM: 29.2
2053 Male, age 18, unknown 31.6
2140 Male, age 76, both hemispheres 29.1
2272 Male, age 74, both hemispheres 26.9
Pretectal area
nTPM: 33.6
1816 Male, age 51, unknown 38.5
2007 Male, age 72, unknown 37.9
2407 Male, age 75, both hemispheres 36.0
1817 Female, age 42, unknown 35.6
1944 Female, age 72, unknown 35.4
2316 Male, age 76, right hemisphere 34.6
1815 Male, age 53, unknown 34.4
2825 Male, age 18, unknown 34.1
2667 Female, age 75, unknown 29.4
2224 Female, age 72, unknown 28.3
2273 Male, age 74, both hemispheres 25.4
Red nucleus
nTPM: 34.5
2584 Male, age 75, left hemisphere 42.5
2588 Male, age 74, left hemisphere 40.2
2227 Male, age 72, unknown 38.4
2769 Male, age 72, unknown 37.9
2503 Female, age 72, unknown 35.3
2785 Male, age 18, unknown 35.2
1904 Male, age 53, unknown 34.8
1954 Female, age 42, unknown 32.3
2725 Female, age 75, unknown 31.3
1865 Male, age 51, unknown 30.0
1821 Female, age 72, unknown 28.8
2823 Male, age 76, right hemisphere 27.5
Substantia nigra
nTPM: 35.6
2665 Male, age 74, both hemispheres 45.5
1916 Female, age 42, unknown 40.8
2583 Male, age 75, right hemisphere 39.0
1851 Male, age 51, unknown 38.0
2699 Male, age 18, unknown 35.4
1889 Female, age 72, unknown 35.1
2590 Female, age 75, unknown 34.1
1941 Male, age 53, unknown 32.6
2241 Male, age 72, unknown 28.1
2409 Female, age 72, unknown 27.1
Superior colliculus
nTPM: 35.2
2664 Male, age 75, both hemispheres 41.5
2668 Female, age 75, unknown 40.0
2087 Female, age 72, unknown 38.7
2261 Male, age 18, unknown 37.8
1796 Male, age 53, unknown 37.4
1913 Female, age 42, unknown 33.4
1839 Male, age 51, unknown 32.6
1995 Male, age 72, unknown 32.5
1895 Male, age 76, right hemisphere 29.5
2587 Male, age 74, left hemisphere 28.5
Ventral tegmental area
nTPM: 34.3
1942 Male, age 51, unknown 36.7
2410 Female, age 72, unknown 36.1
1915 Female, age 42, unknown 34.9
2223 Female, age 72, unknown 33.6
2218 Male, age 76, both hemispheres 32.8
2021 Male, age 53, unknown 32.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.7
Samples: 139

Max nTPM: 79.5
Min nTPM: 27.3
Std nTPM: 10.9
Median nTPM: 53.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 79.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 75.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 75.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 72.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 72.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 72.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 71.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 71.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 70.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 70.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 70.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.7
FF:10158-103A5 76 years, female 23.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.1
Pig sample Sample description nTPM
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 29.6
Min nTPM: 24.1
Sample A Female 25.3
Sample B Female 24.1
Sample C Male 25.9
Sample D Male 29.6
Periaqueductal gray
nTPM: 20.7
Samples: 3

Max nTPM: 22.4
Min nTPM: 19.5
Sample B Female 20.2
Sample C Male 22.4
Sample D Male 19.5
Substantia nigra
nTPM: 24.9
Samples: 4

Max nTPM: 26.4
Min nTPM: 23.1
Sample A Female 26.4
Sample B Female 23.8
Sample C Male 23.1
Sample D Male 26.2
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 28.7
Min nTPM: 23.4
Sample A Female 27.5
Sample B Female 28.7
Sample C Male 23.4
Sample D Male 28.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.4
Sample A Male 17.1
Sample B Male 13.8
Sample C Female 13.4
Sample D Female 14.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
69671666 Antisense, RP_050428_02_A08, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.