BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:44.4 nTPM
HPA:44.4 nTPM
GTEx:69.0 nTPM
FANTOM5:31.4 Scaled Tags Per Million
Pig:28.1 nTPM
Mouse:17.2 nTPM
Allen mouse:3.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA073607Antibody CAB011538
Glial cells Not detectedMedium
Neuronal cells Not detectedMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.0
2290 Female, age 72, unknown 46.4
1781 Male, age 74, unknown 41.3
2846 Female, age 79, unknown 39.0
2289 Male, age 61, right hemisphere 38.7
1854 Male, age 80, left hemisphere 37.6
2288 Male, age 75, left hemisphere 37.2
1857 Female, age 85, left hemisphere 36.7
2481 Female, age 94, left hemisphere 34.7
Claustrum
nTPM: 42.7
2645 Female, age 72, unknown 52.8
2284 Female, age 91, both hemispheres 45.4
2568 Male, age 61, both hemispheres 45.3
2491 Male, age 75, both hemispheres 45.1
2198 Male, age 80, both hemispheres 42.1
1956 Male, age 74, unknown 39.7
2292 Female, age 85, both hemispheres 39.6
2196 Female, age 79, unknown 38.2
2392 Female, age 94, both hemispheres 36.0
Globus pallidus, externus
nTPM: 37.0
2567 Female, age 72, unknown 45.2
2646 Male, age 61, right hemisphere 42.3
2772 Female, age 79, unknown 37.3
1996 Male, age 80, right hemisphere 33.2
2395 Male, age 75, both hemispheres 26.7
Globus pallidus, internus
nTPM: 33.5
2111 Female, age 85, right hemisphere 38.7
2566 Female, age 72, unknown 36.8
2483 Female, age 94, right hemisphere 35.6
2287 Male, age 75, right hemisphere 32.6
2778 Female, age 91, both hemispheres 31.5
1818 Male, age 74, unknown 30.3
2037 Male, age 80, right hemisphere 28.6
Nucleus accumbens
nTPM: 38.3
1783 Male, age 74, unknown 49.8
1806 Female, age 85, left hemisphere 40.2
2824 Male, age 61, right hemisphere 38.9
2286 Male, age 75, left hemisphere 38.5
1856 Female, age 91, right hemisphere 37.0
2732 Male, age 80, right hemisphere 36.1
2698 Female, age 72, unknown 35.8
2391 Female, age 94, left hemisphere 30.1
Nucleus basalis of Meynert
nTPM: 35.4
2569 Male, age 61, both hemispheres 42.2
2484 Female, age 94, left hemisphere 35.3
2393 Male, age 80, right hemisphere 33.0
2821 Male, age 75, both hemispheres 31.2
Nucleus of the diagonal band
nTPM: 41.3
2029 Male, age 61, right hemisphere 46.8
2775 Male, age 80, right hemisphere 43.1
2195 Female, age 85, both hemispheres 42.5
1812 Female, age 91, both hemispheres 41.0
1979 Male, age 74, unknown 33.2
Olfactory tubercle
nTPM: 44.4
2487 Female, age 94, left hemisphere 50.9
2856 Male, age 75, right hemisphere 44.8
1998 Female, age 91, both hemispheres 42.9
1846 Male, age 80, right hemisphere 39.3
Putamen
nTPM: 41.1
2647 Male, age 75, left hemisphere 46.1
2489 Female, age 72, unknown 44.9
2466 Female, age 79, unknown 40.9
1829 Male, age 74, unknown 40.7
1838 Male, age 80, right hemisphere 40.5
1937 Female, age 91, right hemisphere 39.7
2482 Female, age 94, left hemisphere 34.8
Septal nuclei
nTPM: 41.0
1960 Male, age 74, unknown 49.5
2059 Female, age 85, both hemispheres 48.1
2031 Female, age 72, unknown 43.5
2394 Male, age 61, left hemisphere 40.3
2629 Female, age 94, right hemisphere 38.5
2009 Female, age 91, both hemispheres 36.1
2199 Male, age 80, right hemisphere 31.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 69.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.5
Samples: 246

Max nTPM: 102.9
Min nTPM: 26.1
Std nTPM: 13.0
Median nTPM: 61.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 102.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 96.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 96.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 94.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 93.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 88.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 86.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 86.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 85.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 85.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 85.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 69.0
Samples: 246

Max nTPM: 113.9
Min nTPM: 21.9
Std nTPM: 14.4
Median nTPM: 68.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 113.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 112.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 107.4
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 106.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 106.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 102.5
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 100.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 100.3
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 99.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 94.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 93.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 65.8
Samples: 205

Max nTPM: 104.1
Min nTPM: 35.2
Std nTPM: 12.2
Median nTPM: 64.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 104.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 97.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 96.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 95.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 95.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 92.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 91.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 89.7
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 88.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 88.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 87.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.4
FF:10164-103B2 76 years, female 31.4
Globus pallidus
Scaled Tags Per Million: 20.8
FF:10161-103A8 76 years, female 25.1
FF:10175-103C4 60 years, female 16.5
Nucleus accumbens
Scaled Tags Per Million: 24.8
FF:10037-101F1 23-56 years, mixed 24.8
Putamen
Scaled Tags Per Million: 25.5
FF:10176-103C5 60 years, female 25.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.1
Pig sample Sample description nTPM
Caudate
nTPM: 27.9
Samples: 4

Max nTPM: 31.7
Min nTPM: 22.5
Sample A Female 22.5
Sample B Female 31.7
Sample C Male 30.5
Sample D Male 26.8
Putamen
nTPM: 28.1
Samples: 4

Max nTPM: 32.5
Min nTPM: 25.9
Sample A Female 27.4
Sample B Female 26.4
Sample C Male 25.9
Sample D Male 32.5
Septum
nTPM: 24.4
Samples: 4

Max nTPM: 26.6
Min nTPM: 18.4
Sample A Female 26.3
Sample B Female 26.6
Sample C Male 26.2
Sample D Male 18.4
Ventral pallidum
nTPM: 27.7
Samples: 4

Max nTPM: 34.3
Min nTPM: 20.7
Sample A Female 20.7
Sample B Female 27.6
Sample C Male 34.3
Sample D Male 28.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 15.5
Samples: 4

Max nTPM: 18.7
Min nTPM: 13.7
Sample A Male 14.5
Sample B Male 18.7
Sample C Female 13.7
Sample D Female 15.0
Septum
nTPM: 16.3
Samples: 4

Max nTPM: 18.6
Min nTPM: 14.7
Sample A Male 18.6
Sample B Male 16.2
Sample C Female 15.6
Sample D Female 14.7
Ventral forebrain
nTPM: 17.2
Samples: 4

Max nTPM: 18.7
Min nTPM: 15.4
Sample A Male 18.7
Sample B Male 16.9
Sample C Female 17.6
Sample D Female 15.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.6
69671666 Antisense, RP_050428_02_A08, Mouse strain C57BL/6J (56 days, male) 3.6
Pallidum
Expression energy: 3.6
69671666 Antisense, RP_050428_02_A08, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.