MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:92.1 nTPM
HPA:92.1 nTPM
GTEx:123.1 nTPM
FANTOM5:37.5 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:12.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.1
2586 Male, age 75, left hemisphere 102.1
2666 Male, age 74, left hemisphere 95.8
2828 Female, age 72, unknown 92.6
1870 Female, age 42, unknown 86.6
1830 Male, age 51, unknown 86.4
1833 Male, age 53, unknown 86.1
2411 Female, age 72, unknown 85.6
1827 Male, age 72, unknown 83.1
2019 Male, age 18, unknown 82.7
2219 Male, age 76, both hemispheres 80.0
Dorsal raphe nucleus
nTPM: 82.8
2016 Female, age 72, unknown 87.0
1828 Male, age 53, unknown 84.2
2750 Male, age 76, both hemispheres 84.0
2047 Male, age 72, unknown 80.2
2298 Female, age 72, unknown 78.7
Inferior colliculus
nTPM: 82.3
2849 Male, age 72, unknown 83.8
1890 Male, age 53, unknown 83.7
1848 Female, age 42, unknown 82.3
2097 Female, age 72, unknown 79.4
Median raphe nucleus
nTPM: 77.7
2220 Male, age 76, midline 77.7
Pedunculopontine tegmental nucleus
nTPM: 79.6
2334 Male, age 80, both hemispheres 82.0
2338 Male, age 61, both hemispheres 78.7
1921 Female, age 85, both hemispheres 78.2
Periaquaductal grey, anterior
nTPM: 84.3
2502 Female, age 75, unknown 88.5
1795 Male, age 51, unknown 84.0
1947 Male, age 18, unknown 80.5
Periaquaductal grey, dorsal
nTPM: 81.6
2464 Female, age 72, unknown 85.6
1831 Male, age 72, unknown 82.0
1840 Male, age 53, unknown 81.3
2850 Male, age 76, both hemispheres 77.5
Periaquaductal grey, lateral
nTPM: 82.3
2053 Male, age 18, unknown 86.7
2140 Male, age 76, both hemispheres 81.7
2272 Male, age 74, both hemispheres 78.4
Pretectal area
nTPM: 81.5
2825 Male, age 18, unknown 86.6
1815 Male, age 53, unknown 85.0
2407 Male, age 75, both hemispheres 83.9
2007 Male, age 72, unknown 82.6
2316 Male, age 76, right hemisphere 82.6
1817 Female, age 42, unknown 82.1
1816 Male, age 51, unknown 81.8
2224 Female, age 72, unknown 79.6
1944 Female, age 72, unknown 79.1
2667 Female, age 75, unknown 77.7
2273 Male, age 74, both hemispheres 76.0
Red nucleus
nTPM: 92.1
2588 Male, age 74, left hemisphere 101.3
2503 Female, age 72, unknown 99.6
2227 Male, age 72, unknown 94.9
2769 Male, age 72, unknown 94.2
1904 Male, age 53, unknown 92.2
2584 Male, age 75, left hemisphere 92.1
1865 Male, age 51, unknown 90.6
1954 Female, age 42, unknown 89.4
2725 Female, age 75, unknown 89.0
2823 Male, age 76, right hemisphere 88.7
2785 Male, age 18, unknown 87.3
1821 Female, age 72, unknown 85.5
Substantia nigra
nTPM: 84.4
2665 Male, age 74, both hemispheres 91.3
2583 Male, age 75, right hemisphere 89.1
2699 Male, age 18, unknown 88.9
1851 Male, age 51, unknown 86.9
2590 Female, age 75, unknown 86.8
2409 Female, age 72, unknown 82.0
1916 Female, age 42, unknown 81.9
1889 Female, age 72, unknown 80.8
2241 Male, age 72, unknown 78.8
1941 Male, age 53, unknown 77.3
Superior colliculus
nTPM: 85.0
2664 Male, age 75, both hemispheres 91.2
1995 Male, age 72, unknown 90.5
1913 Female, age 42, unknown 85.9
2587 Male, age 74, left hemisphere 85.2
1796 Male, age 53, unknown 85.1
2668 Female, age 75, unknown 84.8
1839 Male, age 51, unknown 84.2
2261 Male, age 18, unknown 82.4
2087 Female, age 72, unknown 81.7
1895 Male, age 76, right hemisphere 79.2
Ventral tegmental area
nTPM: 83.5
2410 Female, age 72, unknown 86.1
2021 Male, age 53, unknown 84.9
2223 Female, age 72, unknown 84.3
1915 Female, age 42, unknown 83.1
1942 Male, age 51, unknown 82.6
2218 Male, age 76, both hemispheres 80.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 123.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 123.1
Samples: 139

Max nTPM: 339.6
Min nTPM: 29.7
Std nTPM: 63.0
Median nTPM: 103.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 339.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 334.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 302.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 302.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 267.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 259.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 258.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 258.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 255.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 240.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 239.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.5
FF:10158-103A5 76 years, female 37.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.5
Pig sample Sample description nTPM
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 31.9
Min nTPM: 15.0
Sample A Female 31.9
Sample B Female 17.9
Sample C Male 15.0
Sample D Male 17.4
Periaqueductal gray
nTPM: 17.0
Samples: 3

Max nTPM: 18.6
Min nTPM: 16.1
Sample B Female 16.1
Sample C Male 18.6
Sample D Male 16.2
Substantia nigra
nTPM: 18.8
Samples: 4

Max nTPM: 21.9
Min nTPM: 16.5
Sample A Female 21.9
Sample B Female 17.2
Sample C Male 16.5
Sample D Male 19.6
Superior colliculi
nTPM: 18.9
Samples: 4

Max nTPM: 24.4
Min nTPM: 13.5
Sample A Female 24.4
Sample B Female 13.5
Sample C Male 17.8
Sample D Male 19.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.3
Sample A Male 12.0
Sample B Male 13.9
Sample C Female 10.3
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68441616 Antisense, RP_041214_02_F11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.