MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:879.5 nTPM
HPA:879.5 nTPM
GTEx:1296.0 nTPM
FANTOM5:506.9 Scaled Tags Per Million
Pig:118.9 nTPM
Mouse:128.2 nTPM
Allen mouse:10.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 879.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 864.1
2586 Male, age 75, left hemisphere 916.5
2666 Male, age 74, left hemisphere 898.3
1870 Female, age 42, unknown 894.2
1830 Male, age 51, unknown 865.4
2411 Female, age 72, unknown 865.1
1833 Male, age 53, unknown 856.6
2828 Female, age 72, unknown 854.3
2219 Male, age 76, both hemispheres 836.1
1827 Male, age 72, unknown 834.6
2019 Male, age 18, unknown 819.8
Dorsal raphe nucleus
nTPM: 852.3
2750 Male, age 76, both hemispheres 874.5
2047 Male, age 72, unknown 859.3
1828 Male, age 53, unknown 848.8
2016 Female, age 72, unknown 846.5
2298 Female, age 72, unknown 832.2
Inferior colliculus
nTPM: 853.9
2849 Male, age 72, unknown 878.2
1848 Female, age 42, unknown 860.2
1890 Male, age 53, unknown 859.2
2097 Female, age 72, unknown 817.9
Median raphe nucleus
nTPM: 875.8
2220 Male, age 76, midline 875.8
Pedunculopontine tegmental nucleus
nTPM: 876.4
2338 Male, age 61, both hemispheres 911.7
2334 Male, age 80, both hemispheres 897.6
1921 Female, age 85, both hemispheres 819.8
Periaquaductal grey, anterior
nTPM: 873.7
2502 Female, age 75, unknown 899.5
1947 Male, age 18, unknown 867.1
1795 Male, age 51, unknown 854.5
Periaquaductal grey, dorsal
nTPM: 846.1
2850 Male, age 76, both hemispheres 863.0
1840 Male, age 53, unknown 854.0
1831 Male, age 72, unknown 834.5
2464 Female, age 72, unknown 832.9
Periaquaductal grey, lateral
nTPM: 843.1
2053 Male, age 18, unknown 867.9
2272 Male, age 74, both hemispheres 832.8
2140 Male, age 76, both hemispheres 828.6
Pretectal area
nTPM: 830.2
2825 Male, age 18, unknown 853.5
2407 Male, age 75, both hemispheres 851.1
1817 Female, age 42, unknown 844.2
2007 Male, age 72, unknown 842.9
1815 Male, age 53, unknown 835.3
2224 Female, age 72, unknown 833.9
2316 Male, age 76, right hemisphere 828.2
1944 Female, age 72, unknown 820.8
1816 Male, age 51, unknown 812.2
2667 Female, age 75, unknown 809.7
2273 Male, age 74, both hemispheres 800.8
Red nucleus
nTPM: 877.3
2503 Female, age 72, unknown 932.7
2584 Male, age 75, left hemisphere 895.5
1865 Male, age 51, unknown 894.2
2227 Male, age 72, unknown 890.0
2769 Male, age 72, unknown 889.9
1904 Male, age 53, unknown 886.3
2725 Female, age 75, unknown 872.7
1821 Female, age 72, unknown 869.4
2588 Male, age 74, left hemisphere 858.4
2785 Male, age 18, unknown 856.9
1954 Female, age 42, unknown 854.5
2823 Male, age 76, right hemisphere 827.8
Substantia nigra
nTPM: 877.5
2699 Male, age 18, unknown 957.0
1851 Male, age 51, unknown 921.4
2665 Male, age 74, both hemispheres 898.7
1916 Female, age 42, unknown 885.7
2590 Female, age 75, unknown 877.4
2409 Female, age 72, unknown 870.2
2583 Male, age 75, right hemisphere 863.3
1889 Female, age 72, unknown 853.3
1941 Male, age 53, unknown 842.2
2241 Male, age 72, unknown 806.2
Superior colliculus
nTPM: 858.2
1995 Male, age 72, unknown 904.0
1913 Female, age 42, unknown 893.1
2587 Male, age 74, left hemisphere 886.6
1796 Male, age 53, unknown 877.0
2664 Male, age 75, both hemispheres 864.9
2668 Female, age 75, unknown 856.4
1839 Male, age 51, unknown 851.1
1895 Male, age 76, right hemisphere 829.1
2261 Male, age 18, unknown 814.1
2087 Female, age 72, unknown 806.1
Ventral tegmental area
nTPM: 879.5
2223 Female, age 72, unknown 911.1
2410 Female, age 72, unknown 896.0
1915 Female, age 42, unknown 878.0
2021 Male, age 53, unknown 865.8
2218 Male, age 76, both hemispheres 864.2
1942 Male, age 51, unknown 862.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1296.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1296.0
Samples: 139

Max nTPM: 4516.1
Min nTPM: 408.1
Std nTPM: 567.1
Median nTPM: 1225.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4516.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3182.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3084.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3040.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2444.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2321.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2314.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2196.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2185.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2154.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2134.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 506.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 506.9
FF:10158-103A5 76 years, female 506.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 118.9
Pig sample Sample description nTPM
Midbrain
nTPM: 117.4
Samples: 4

Max nTPM: 177.4
Min nTPM: 88.0
Sample A Female 177.4
Sample B Female 107.7
Sample C Male 96.4
Sample D Male 88.0
Periaqueductal gray
nTPM: 98.3
Samples: 3

Max nTPM: 112.1
Min nTPM: 90.2
Sample B Female 92.6
Sample C Male 112.1
Sample D Male 90.2
Substantia nigra
nTPM: 110.6
Samples: 4

Max nTPM: 143.2
Min nTPM: 92.5
Sample A Female 143.2
Sample B Female 107.6
Sample C Male 92.5
Sample D Male 99.1
Superior colliculi
nTPM: 118.9
Samples: 4

Max nTPM: 146.4
Min nTPM: 103.8
Sample A Female 146.4
Sample B Female 103.8
Sample C Male 109.3
Sample D Male 116.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.2
Samples: 4

Max nTPM: 147.2
Min nTPM: 116.2
Sample A Male 147.2
Sample B Male 116.3
Sample C Female 116.2
Sample D Female 133.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.6
69173436 Antisense, RP_050329_01_E12, Mouse strain C57BL/6J (56 days, male) 10.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.