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RPL28
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:901.9 nTPM
HPA:901.9 nTPM
FANTOM5:388.8 Scaled Tags Per Million
Pig:120.0 nTPM
Mouse:162.4 nTPM
Allen mouse:10.3 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 901.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 854.7
2396 Male, age 61, right hemisphere 907.7
2497 Male, age 66, unknown 832.5
2032 Female, age 42, unknown 823.9
Centromedial thalamic nucleus
nTPM: 874.5
2279 Female, age 85, left hemisphere 947.1
2401 Male, age 76, right hemisphere 801.8
Habenula
nTPM: 803.2
1957 Male, age 80, both hemispheres 833.4
2203 Male, age 61, left hemisphere 799.7
2276 Male, age 66, unknown 797.1
2252 Male, age 62, unknown 782.5
Lateral geniculate body
nTPM: 834.1
2857 Male, age 74, right hemisphere 864.4
2575 Female, age 94, right hemisphere 863.4
2659 Male, age 66, unknown 850.3
1953 Male, age 62, unknown 835.8
2035 Female, age 72, unknown 831.5
2841 Male, age 80, both hemispheres 827.5
2399 Male, age 61, left hemisphere 811.9
2106 Female, age 67, right hemisphere 787.5
Lateral thalamic nuclei
nTPM: 848.3
2577 Male, age 74, both hemispheres 877.3
2661 Female, age 72, unknown 867.6
2573 Female, age 94, left hemisphere 851.2
2765 Female, age 67, both hemispheres 842.5
1903 Male, age 76, left hemisphere 802.8
Medial dorsal thalamic nucleus
nTPM: 841.7
2572 Female, age 94, right hemisphere 944.3
2492 Male, age 75, right hemisphere 853.9
2039 Female, age 72, unknown 852.6
1810 Male, age 48, unknown 851.6
2660 Female, age 72, unknown 846.4
1930 Female, age 42, unknown 839.9
2576 Male, age 74, both hemispheres 839.8
1971 Male, age 61, right hemisphere 833.7
1859 Male, age 76, both hemispheres 829.5
2026 Male, age 62, unknown 821.4
2498 Male, age 66, unknown 820.8
2402 Female, age 67, both hemispheres 816.7
2283 Male, age 80, right hemisphere 792.0
Medial geniculate body
nTPM: 862.6
2571 Male, age 75, right hemisphere 958.3
2650 Female, age 94, left hemisphere 866.3
2049 Male, age 76, both hemispheres 866.1
2207 Male, age 80, right hemisphere 860.0
2217 Female, age 72, unknown 846.0
2657 Male, age 74, right hemisphere 829.6
1811 Female, age 42, unknown 811.8
Nucleus reuniens
nTPM: 873.9
2210 Female, age 85, left hemisphere 892.4
2205 Male, age 80, left hemisphere 879.7
2212 Female, age 67, left hemisphere 849.6
Nucleus rhomboideus
nTPM: 854.0
2280 Female, age 85, left hemisphere 881.2
2213 Female, age 67, left hemisphere 855.5
2206 Male, age 80, both hemispheres 825.2
Posterior thalamic nucleus
nTPM: 901.9
2649 Female, age 94, both hemispheres 1091.6
2655 Male, age 74, right hemisphere 861.6
2495 Female, age 67, right hemisphere 830.6
2266 Male, age 76, right hemisphere 824.0
Pulvinar
nTPM: 827.3
2724 Male, age 74, right hemisphere 856.7
2582 Female, age 72, unknown 844.0
2496 Female, age 67, right hemisphere 842.2
2499 Male, age 66, unknown 835.7
2214 Male, age 76, right hemisphere 824.7
1972 Male, age 62, unknown 824.2
1929 Male, age 48, unknown 821.2
2398 Male, age 61, left hemisphere 817.4
1932 Male, age 80, right hemisphere 808.2
1899 Female, age 42, unknown 798.8
Subthalamic nucleus
nTPM: 858.2
2658 Male, age 74, both hemispheres 885.4
2124 Male, age 62, unknown 882.1
2275 Male, age 66, unknown 862.6
2056 Female, age 72, unknown 858.4
2216 Male, age 48, unknown 856.0
2282 Male, age 61, both hemispheres 849.6
2779 Female, age 42, unknown 848.8
2406 Female, age 72, unknown 823.2
Ventral posterolateral thalamic nucleus
nTPM: 831.3
2397 Male, age 61, right hemisphere 854.7
2578 Male, age 74, both hemispheres 848.1
2197 Male, age 80, both hemispheres 824.4
2570 Male, age 75, right hemisphere 822.9
2581 Female, age 72, unknown 819.3
2740 Male, age 76, right hemisphere 818.6
Ventral posteromedial thalamic nucleus
nTPM: 830.0
2653 Male, age 74, both hemispheres 849.9
2202 Male, age 61, left hemisphere 848.8
2127 Male, age 76, right hemisphere 832.3
2281 Male, age 75, right hemisphere 818.2
2758 Male, age 80, both hemispheres 800.7
Ventral thalamic nuclei
nTPM: 849.5
2652 Male, age 74, left hemisphere 888.0
2291 Female, age 72, unknown 862.4
2580 Male, age 66, unknown 860.8
2204 Male, age 80, both hemispheres 857.6
1860 Male, age 76, both hemispheres 849.0
1845 Male, age 48, unknown 843.2
1912 Female, age 42, unknown 839.5
2858 Female, age 72, unknown 824.1
2285 Male, age 62, unknown 820.9
Ventromedial nucleus
nTPM: 830.6
1982 Female, age 72, unknown 848.0
1822 Female, age 42, unknown 813.2
Zona incerta
nTPM: 852.9
2403 Male, age 62, unknown 878.2
2663 Female, age 72, unknown 850.8
2822 Male, age 74, right hemisphere 850.8
2215 Male, age 66, unknown 846.3
2208 Male, age 80, right hemisphere 838.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 388.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 388.8
FF:10154-103A1 76 years, female 388.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.0
Pig sample Sample description nTPM
Thalamus
nTPM: 120.0
Samples: 4

Max nTPM: 151.2
Min nTPM: 91.5
Sample A Female 151.2
Sample B Female 91.5
Sample C Male 116.6
Sample D Male 120.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 162.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 162.4
Samples: 4

Max nTPM: 178.4
Min nTPM: 144.9
Sample A Male 168.5
Sample B Male 144.9
Sample C Female 178.4
Sample D Female 157.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 10.3
69173436 Antisense, RP_050329_01_E12, Mouse strain C57BL/6J (56 days, male) 10.3

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