We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CASC3
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • CASC3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:84.9 nTPM
HPA:84.9 nTPM
GTEx:65.5 nTPM
FANTOM5:116.6 Scaled Tags Per Million
Pig:30.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 84.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 80.5
2565 Male, age 75, midline 90.0
2048 Male, age 55, midline 81.3
2816 Male, age 47, midline 78.8
1981 Female, age 72, midline 76.2
2194 Female, age 79, both hemispheres 76.2
Cervical spinal cord, dorsal horn
nTPM: 74.8
2296 Male, age 66, both hemispheres 80.3
1877 Male, age 55, unknown 77.8
2173 Female, age 72, unknown 77.5
2069 Male, age 47, both hemispheres 73.3
2721 Male, age 90, both hemispheres 72.4
2297 Male, age 75, both hemispheres 67.4
Cervical spinal cord, ventral horn
nTPM: 84.9
2480 Male, age 75, both hemispheres 97.4
2809 Male, age 90, both hemispheres 90.6
2295 Male, age 66, both hemispheres 87.8
2820 Female, age 79, both hemispheres 79.4
2098 Female, age 72, unknown 78.0
2068 Male, age 55, unknown 76.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 65.5
Samples: 159

Max nTPM: 148.3
Min nTPM: 25.2
Std nTPM: 21.6
Median nTPM: 63.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 148.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 146.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 137.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 130.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 122.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 119.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 118.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 116.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 110.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 108.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 103.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 103.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 97.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 94.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 89.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 89.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 87.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 87.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 86.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 85.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 84.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 82.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 81.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 81.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 80.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 80.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 79.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 79.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 79.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 79.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 78.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 77.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 77.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 74.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 74.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 73.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 73.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 73.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 72.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 72.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 72.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 72.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 72.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 71.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 71.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 71.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 70.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 70.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 70.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 69.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 69.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 69.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 69.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 69.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 69.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 68.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 68.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 68.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 67.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 67.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 67.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 67.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 66.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 66.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 66.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 65.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 65.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 65.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 65.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 64.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 64.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 64.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 64.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 64.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 64.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 63.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 63.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 63.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 63.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 63.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 62.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 62.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 62.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 62.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 61.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 61.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 61.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 61.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 60.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 60.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 60.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 60.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 60.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 60.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 60.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 59.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 58.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 58.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 58.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 58.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 58.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 58.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 58.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 58.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 58.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 57.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 56.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 55.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 55.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 55.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 55.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 54.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 54.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 54.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 53.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 53.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 53.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 52.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 52.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 52.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 52.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 51.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 50.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 50.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 49.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 49.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 49.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 49.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 49.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 48.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 48.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 47.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 47.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 46.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 45.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 44.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 44.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 43.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 43.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 42.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 42.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 41.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 40.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 40.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 40.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 39.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 39.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 38.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 38.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 37.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 36.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 36.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 36.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 35.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 32.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 30.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 25.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 25.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 116.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 116.6
FF:10159-103A6 76 years, female 124.9
FF:10181-103D1 60 years, female 108.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 29.0
Samples: 4

Max nTPM: 31.3
Min nTPM: 27.1
Sample A Female 29.8
Sample B Female 27.6
Sample C Male 27.1
Sample D Male 31.3
Ventral spinal cord
nTPM: 30.6
Samples: 4

Max nTPM: 33.4
Min nTPM: 27.8
Sample A Female 33.4
Sample B Female 27.8
Sample C Male 31.3
Sample D Male 29.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.