MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:325.4 nTPM
HPA:325.4 nTPM
GTEx:215.0 nTPM
FANTOM5:369.3 Scaled Tags Per Million
Pig:94.6 nTPM
Mouse:119.4 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 325.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 291.3
2828 Female, age 72, unknown 300.2
1833 Male, age 53, unknown 296.4
1870 Female, age 42, unknown 296.0
2019 Male, age 18, unknown 295.3
2411 Female, age 72, unknown 294.3
2666 Male, age 74, left hemisphere 293.0
1830 Male, age 51, unknown 290.9
2586 Male, age 75, left hemisphere 289.5
1827 Male, age 72, unknown 279.7
2219 Male, age 76, both hemispheres 277.3
Dorsal raphe nucleus
nTPM: 289.6
2750 Male, age 76, both hemispheres 308.5
2298 Female, age 72, unknown 288.9
2047 Male, age 72, unknown 288.0
1828 Male, age 53, unknown 286.4
2016 Female, age 72, unknown 276.1
Inferior colliculus
nTPM: 272.6
1890 Male, age 53, unknown 280.9
2097 Female, age 72, unknown 270.9
1848 Female, age 42, unknown 270.3
2849 Male, age 72, unknown 268.4
Median raphe nucleus
nTPM: 301.7
2220 Male, age 76, midline 301.7
Pedunculopontine tegmental nucleus
nTPM: 325.4
2338 Male, age 61, both hemispheres 389.0
2334 Male, age 80, both hemispheres 319.2
1921 Female, age 85, both hemispheres 268.1
Periaquaductal grey, anterior
nTPM: 273.0
1795 Male, age 51, unknown 278.4
1947 Male, age 18, unknown 275.0
2502 Female, age 75, unknown 265.6
Periaquaductal grey, dorsal
nTPM: 268.4
2850 Male, age 76, both hemispheres 286.3
1831 Male, age 72, unknown 275.2
2464 Female, age 72, unknown 264.5
1840 Male, age 53, unknown 247.8
Periaquaductal grey, lateral
nTPM: 277.1
2272 Male, age 74, both hemispheres 296.2
2140 Male, age 76, both hemispheres 270.3
2053 Male, age 18, unknown 265.0
Pretectal area
nTPM: 282.1
1817 Female, age 42, unknown 297.3
2007 Male, age 72, unknown 296.8
1815 Male, age 53, unknown 296.2
1944 Female, age 72, unknown 285.1
2316 Male, age 76, right hemisphere 284.1
1816 Male, age 51, unknown 283.0
2273 Male, age 74, both hemispheres 277.6
2667 Female, age 75, unknown 272.4
2224 Female, age 72, unknown 271.9
2825 Male, age 18, unknown 270.4
2407 Male, age 75, both hemispheres 267.8
Red nucleus
nTPM: 305.3
1904 Male, age 53, unknown 316.1
2725 Female, age 75, unknown 314.9
2823 Male, age 76, right hemisphere 313.6
1865 Male, age 51, unknown 313.5
2503 Female, age 72, unknown 311.8
2769 Male, age 72, unknown 311.8
2227 Male, age 72, unknown 310.0
1821 Female, age 72, unknown 308.9
2785 Male, age 18, unknown 307.2
1954 Female, age 42, unknown 304.0
2584 Male, age 75, left hemisphere 277.6
2588 Male, age 74, left hemisphere 273.8
Substantia nigra
nTPM: 306.5
1916 Female, age 42, unknown 349.0
2699 Male, age 18, unknown 331.9
1851 Male, age 51, unknown 323.0
2590 Female, age 75, unknown 306.9
2665 Male, age 74, both hemispheres 301.0
1941 Male, age 53, unknown 299.8
2583 Male, age 75, right hemisphere 297.7
1889 Female, age 72, unknown 294.8
2409 Female, age 72, unknown 291.2
2241 Male, age 72, unknown 269.3
Superior colliculus
nTPM: 282.7
1913 Female, age 42, unknown 303.8
2587 Male, age 74, left hemisphere 300.4
1995 Male, age 72, unknown 300.2
2668 Female, age 75, unknown 289.5
1796 Male, age 53, unknown 285.6
2087 Female, age 72, unknown 277.5
2261 Male, age 18, unknown 277.4
1839 Male, age 51, unknown 270.8
1895 Male, age 76, right hemisphere 270.2
2664 Male, age 75, both hemispheres 251.6
Ventral tegmental area
nTPM: 306.1
2218 Male, age 76, both hemispheres 322.5
1915 Female, age 42, unknown 314.0
2223 Female, age 72, unknown 311.5
2410 Female, age 72, unknown 307.0
2021 Male, age 53, unknown 295.6
1942 Male, age 51, unknown 286.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 215.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 215.0
Samples: 139

Max nTPM: 426.3
Min nTPM: 92.3
Std nTPM: 54.7
Median nTPM: 204.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 426.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 378.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 360.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 352.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 335.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 326.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 324.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 321.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 321.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 308.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 304.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 369.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 369.3
FF:10158-103A5 76 years, female 369.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 94.6
Pig sample Sample description nTPM
Midbrain
nTPM: 94.1
Samples: 4

Max nTPM: 138.2
Min nTPM: 64.9
Sample A Female 138.2
Sample B Female 89.2
Sample C Male 84.0
Sample D Male 64.9
Periaqueductal gray
nTPM: 76.0
Samples: 3

Max nTPM: 84.2
Min nTPM: 71.4
Sample B Female 71.4
Sample C Male 84.2
Sample D Male 72.5
Substantia nigra
nTPM: 94.6
Samples: 4

Max nTPM: 109.2
Min nTPM: 82.2
Sample A Female 109.2
Sample B Female 82.2
Sample C Male 99.2
Sample D Male 87.9
Superior colliculi
nTPM: 91.7
Samples: 4

Max nTPM: 110.7
Min nTPM: 69.8
Sample A Female 110.7
Sample B Female 69.8
Sample C Male 94.0
Sample D Male 92.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.4
Samples: 4

Max nTPM: 128.0
Min nTPM: 111.8
Sample A Male 128.0
Sample B Male 113.8
Sample C Female 111.8
Sample D Female 124.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
73514809 Antisense, RP_051121_03_B08, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.