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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:315.2 nTPM
HPA:315.2 nTPM
GTEx:257.9 nTPM
FANTOM5:262.4 Scaled Tags Per Million
Pig:118.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 315.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 302.8
1981 Female, age 72, midline 329.5
2565 Male, age 75, midline 316.7
2194 Female, age 79, both hemispheres 298.2
2816 Male, age 47, midline 289.8
2048 Male, age 55, midline 279.8
Cervical spinal cord, dorsal horn
nTPM: 312.0
2173 Female, age 72, unknown 351.3
2069 Male, age 47, both hemispheres 319.3
2296 Male, age 66, both hemispheres 317.9
1877 Male, age 55, unknown 300.5
2721 Male, age 90, both hemispheres 293.4
2297 Male, age 75, both hemispheres 289.5
Cervical spinal cord, ventral horn
nTPM: 315.2
2809 Male, age 90, both hemispheres 341.6
2098 Female, age 72, unknown 335.5
2480 Male, age 75, both hemispheres 313.2
2295 Male, age 66, both hemispheres 308.5
2068 Male, age 55, unknown 302.9
2820 Female, age 79, both hemispheres 289.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 257.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 257.9
Samples: 159

Max nTPM: 550.9
Min nTPM: 149.3
Std nTPM: 62.1
Median nTPM: 258.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 550.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 461.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 433.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 431.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 431.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 408.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 370.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 367.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 365.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 349.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 344.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 338.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 337.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 325.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 325.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 325.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 323.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 320.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 318.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 314.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 312.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 309.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 304.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 303.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 301.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 301.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 300.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 297.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 297.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 296.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 295.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 295.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 294.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 292.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 292.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 291.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 289.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 289.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 288.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 286.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 286.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 285.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 285.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 284.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 284.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 284.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 282.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 280.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 279.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 279.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 278.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 278.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 276.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 275.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 274.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 274.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 273.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 273.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 273.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 273.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 270.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 270.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 269.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 268.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 268.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 267.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 266.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 266.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 266.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 266.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 264.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 264.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 264.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 264.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 263.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 262.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 262.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 262.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 259.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 258.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 257.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 256.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 256.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 253.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 251.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 251.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 251.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 250.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 249.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 248.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 246.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 246.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 246.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 244.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 244.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 239.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 239.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 238.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 238.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 235.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 235.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 235.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 234.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 234.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 230.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 229.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 229.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 229.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 228.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 228.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 227.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 226.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 225.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 222.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 219.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 219.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 219.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 217.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 217.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 213.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 213.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 209.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 208.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 206.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 206.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 206.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 204.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 204.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 203.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 202.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 200.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 199.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 199.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 198.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 198.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 195.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 194.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 193.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 189.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 187.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 186.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 185.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 184.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 184.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 183.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 180.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 179.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 178.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 176.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 173.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 171.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 170.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 164.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 157.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 156.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 153.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 151.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 149.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 149.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 262.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 262.4
FF:10181-103D1 60 years, female 309.6
FF:10159-103A6 76 years, female 215.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 118.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 102.4
Samples: 4

Max nTPM: 123.4
Min nTPM: 85.2
Sample A Female 85.2
Sample B Female 98.5
Sample C Male 123.4
Sample D Male 102.5
Ventral spinal cord
nTPM: 118.2
Samples: 4

Max nTPM: 131.9
Min nTPM: 104.8
Sample A Female 118.8
Sample B Female 104.8
Sample C Male 131.9
Sample D Male 117.2

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