MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:72.7 nTPM
HPA:72.7 nTPM
GTEx:58.2 nTPM
FANTOM5:47.1 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:147.1 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.5
2019 Male, age 18, unknown 76.5
2586 Male, age 75, left hemisphere 73.8
1827 Male, age 72, unknown 71.9
2411 Female, age 72, unknown 69.8
2219 Male, age 76, both hemispheres 68.3
2828 Female, age 72, unknown 67.1
2666 Male, age 74, left hemisphere 66.2
1833 Male, age 53, unknown 64.6
1870 Female, age 42, unknown 64.0
1830 Male, age 51, unknown 62.3
Dorsal raphe nucleus
nTPM: 67.5
2298 Female, age 72, unknown 74.8
1828 Male, age 53, unknown 67.9
2047 Male, age 72, unknown 67.1
2750 Male, age 76, both hemispheres 66.6
2016 Female, age 72, unknown 61.1
Inferior colliculus
nTPM: 66.6
2097 Female, age 72, unknown 73.0
1890 Male, age 53, unknown 67.0
1848 Female, age 42, unknown 65.6
2849 Male, age 72, unknown 60.6
Median raphe nucleus
nTPM: 67.3
2220 Male, age 76, midline 67.3
Pedunculopontine tegmental nucleus
nTPM: 65.1
1921 Female, age 85, both hemispheres 69.0
2334 Male, age 80, both hemispheres 66.7
2338 Male, age 61, both hemispheres 59.7
Periaquaductal grey, anterior
nTPM: 69.5
1795 Male, age 51, unknown 70.2
1947 Male, age 18, unknown 70.0
2502 Female, age 75, unknown 68.5
Periaquaductal grey, dorsal
nTPM: 63.2
2464 Female, age 72, unknown 64.8
1831 Male, age 72, unknown 64.2
1840 Male, age 53, unknown 64.1
2850 Male, age 76, both hemispheres 59.8
Periaquaductal grey, lateral
nTPM: 62.8
2272 Male, age 74, both hemispheres 66.5
2053 Male, age 18, unknown 61.7
2140 Male, age 76, both hemispheres 60.3
Pretectal area
nTPM: 72.7
1816 Male, age 51, unknown 82.6
2007 Male, age 72, unknown 82.1
1817 Female, age 42, unknown 79.9
1944 Female, age 72, unknown 79.5
2667 Female, age 75, unknown 76.4
1815 Male, age 53, unknown 74.7
2224 Female, age 72, unknown 67.4
2273 Male, age 74, both hemispheres 67.3
2316 Male, age 76, right hemisphere 63.6
2825 Male, age 18, unknown 62.8
2407 Male, age 75, both hemispheres 62.7
Red nucleus
nTPM: 69.8
2785 Male, age 18, unknown 74.4
1821 Female, age 72, unknown 74.1
2503 Female, age 72, unknown 72.8
1904 Male, age 53, unknown 71.9
2725 Female, age 75, unknown 70.7
2227 Male, age 72, unknown 68.8
2769 Male, age 72, unknown 68.8
1865 Male, age 51, unknown 68.6
2588 Male, age 74, left hemisphere 68.3
1954 Female, age 42, unknown 67.3
2584 Male, age 75, left hemisphere 66.0
2823 Male, age 76, right hemisphere 65.4
Substantia nigra
nTPM: 72.3
1916 Female, age 42, unknown 83.5
1851 Male, age 51, unknown 79.2
1889 Female, age 72, unknown 78.3
2665 Male, age 74, both hemispheres 72.9
1941 Male, age 53, unknown 70.7
2241 Male, age 72, unknown 70.2
2409 Female, age 72, unknown 68.4
2583 Male, age 75, right hemisphere 68.2
2699 Male, age 18, unknown 67.0
2590 Female, age 75, unknown 65.2
Superior colliculus
nTPM: 68.7
2087 Female, age 72, unknown 78.1
1796 Male, age 53, unknown 74.5
2261 Male, age 18, unknown 71.8
2668 Female, age 75, unknown 71.3
1895 Male, age 76, right hemisphere 66.4
1913 Female, age 42, unknown 65.8
1995 Male, age 72, unknown 65.6
2587 Male, age 74, left hemisphere 65.3
2664 Male, age 75, both hemispheres 64.1
1839 Male, age 51, unknown 64.0
Ventral tegmental area
nTPM: 71.2
2410 Female, age 72, unknown 82.7
2218 Male, age 76, both hemispheres 74.0
1915 Female, age 42, unknown 72.9
1942 Male, age 51, unknown 68.0
2223 Female, age 72, unknown 66.5
2021 Male, age 53, unknown 62.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.2
Samples: 139

Max nTPM: 116.0
Min nTPM: 26.6
Std nTPM: 15.7
Median nTPM: 55.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 116.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 106.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 105.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 92.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 90.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 90.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 87.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 86.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 81.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.1
FF:10158-103A5 76 years, female 47.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 7.6
Sample A Female 8.9
Sample B Female 7.6
Sample C Male 13.2
Sample D Male 13.1
Periaqueductal gray
nTPM: 7.2
Samples: 3

Max nTPM: 7.7
Min nTPM: 6.7
Sample B Female 7.7
Sample C Male 7.2
Sample D Male 6.7
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.0
Sample A Female 11.7
Sample B Female 7.2
Sample C Male 10.2
Sample D Male 7.0
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 12.6
Min nTPM: 8.3
Sample A Female 12.6
Sample B Female 8.3
Sample C Male 12.6
Sample D Male 10.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 147.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.1
Samples: 4

Max nTPM: 152.3
Min nTPM: 144.2
Sample A Male 147.6
Sample B Male 144.4
Sample C Female 144.2
Sample D Female 152.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
81599614 Antisense, RP_071126_03_C09, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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