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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:48.7 nTPM
HPA:48.7 nTPM
GTEx:52.3 nTPM
FANTOM5:155.9 Scaled Tags Per Million
Pig:3.9 nTPM
Mouse:7.3 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 48.7
Sample id Sample description nTPM
Amygdala
nTPM: 30.7
1987 Female, age 91, left hemisphere 40.6
2814 Male, age 76, right hemisphere 36.6
2517 Female, age 94, left hemisphere 26.7
2514 Male, age 75, right hemisphere 26.0
2695 Female, age 67, right hemisphere 23.6
Basal amygdala
nTPM: 41.0
2243 Female, age 91, right hemisphere 58.2
2110 Male, age 80, left hemisphere 49.3
1955 Male, age 76, both hemispheres 38.7
2685 Female, age 94, left hemisphere 36.6
2609 Male, age 75, right hemisphere 32.3
2827 Female, age 67, right hemisphere 31.1
Central amygdala
nTPM: 41.8
2515 Male, age 75, right hemisphere 50.6
2239 Male, age 80, left hemisphere 48.3
1905 Male, age 76, both hemispheres 39.5
2701 Female, age 91, right hemisphere 37.0
2826 Female, age 94, left hemisphere 33.4
Corticomedial amygdala
nTPM: 36.4
2829 Male, age 80, left hemisphere 47.3
2535 Female, age 67, right hemisphere 37.7
2242 Female, age 91, right hemisphere 37.3
2240 Male, age 76, both hemispheres 35.1
2428 Male, age 75, right hemisphere 32.2
2429 Female, age 94, left hemisphere 29.0
Lateral amygdala
nTPM: 34.2
2256 Male, age 80, left hemisphere 54.0
2255 Female, age 91, right hemisphere 39.1
1883 Male, age 76, both hemispheres 35.6
2534 Female, age 94, left hemisphere 35.1
2516 Male, age 75, right hemisphere 24.1
2830 Female, age 67, right hemisphere 17.0
Stria terminalis, bed nucleus
nTPM: 48.7
1974 Female, age 91, both hemispheres 69.6
2486 Female, age 94, both hemispheres 46.6
2201 Male, age 74, unknown 30.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 52.3
Samples: 152

Max nTPM: 227.5
Min nTPM: 12.3
Std nTPM: 32.6
Median nTPM: 41.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 227.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 176.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 152.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 143.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 136.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 125.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 115.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 112.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 109.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 109.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 101.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 101.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 99.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 96.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 95.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 92.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 90.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 88.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 86.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 84.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 84.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 84.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 83.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 82.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 80.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 80.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 78.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 78.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 77.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 76.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 74.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 73.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 71.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 70.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 68.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 66.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 66.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 64.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 62.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 60.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 60.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 57.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 57.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 57.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 56.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 56.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 56.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 56.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 55.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 55.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 55.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 54.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 54.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 54.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 52.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 52.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 52.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 51.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 51.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 51.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 50.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 49.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 49.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 47.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 47.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 47.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 45.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 45.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 44.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 43.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 43.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 43.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 42.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 41.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 41.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 41.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 41.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 39.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 39.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 39.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 38.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 38.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 38.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 38.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 38.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 36.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 36.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 36.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 36.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 36.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 35.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 35.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 34.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 34.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 34.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 33.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 33.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 33.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 33.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 33.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 33.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 33.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 32.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 32.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 31.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 31.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 31.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 31.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 30.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 30.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 30.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 30.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 30.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 30.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 29.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 29.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 29.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 29.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 29.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 28.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 28.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 28.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 28.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 28.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 28.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 27.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 27.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 26.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 26.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 26.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 26.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 25.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 25.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 25.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 24.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 24.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 22.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 22.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 22.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 21.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 20.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 20.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 20.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 18.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 18.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 18.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 17.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 17.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 17.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 12.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 155.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 155.9
FF:10151-102I7 76 years, female 155.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3.9
Pig sample Sample description nTPM
Amygdala
nTPM: 3.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.6
Sample A Female 3.6
Sample B Female 2.6
Sample C Male 4.3
Sample D Male 5.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 7.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 7.4
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.9
Sample A Male 7.7
Sample B Male 8.4
Sample C Female 5.9
Sample D Female 7.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
2522 Antisense, RP_Baylor_102997, Mouse strain C57BL/6J (56 days, male) 0.0
2521 Antisense, RP_Baylor_102997, Mouse strain C57BL/6J (56 days, male) 0.0

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