BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.1 nTPM
HPA:67.1 nTPM
GTEx:44.1 nTPM
FANTOM5:114.4 Scaled Tags Per Million
Pig:57.9 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 57.9
2481 Female, age 94, left hemisphere 62.0
1781 Male, age 74, unknown 61.5
2846 Female, age 79, unknown 58.4
1854 Male, age 80, left hemisphere 57.6
1857 Female, age 85, left hemisphere 57.1
2290 Female, age 72, unknown 56.0
2288 Male, age 75, left hemisphere 55.4
2289 Male, age 61, right hemisphere 55.4
Claustrum
nTPM: 67.1
2645 Female, age 72, unknown 72.9
2198 Male, age 80, both hemispheres 72.3
1956 Male, age 74, unknown 68.5
2284 Female, age 91, both hemispheres 67.3
2568 Male, age 61, both hemispheres 66.4
2196 Female, age 79, unknown 66.2
2491 Male, age 75, both hemispheres 64.5
2392 Female, age 94, both hemispheres 63.7
2292 Female, age 85, both hemispheres 62.1
Globus pallidus, externus
nTPM: 57.3
2395 Male, age 75, both hemispheres 60.6
2772 Female, age 79, unknown 58.5
2646 Male, age 61, right hemisphere 57.2
1996 Male, age 80, right hemisphere 56.0
2567 Female, age 72, unknown 54.3
Globus pallidus, internus
nTPM: 57.7
2483 Female, age 94, right hemisphere 64.4
2287 Male, age 75, right hemisphere 63.6
2778 Female, age 91, both hemispheres 56.6
1818 Male, age 74, unknown 55.5
2111 Female, age 85, right hemisphere 55.4
2037 Male, age 80, right hemisphere 54.8
2566 Female, age 72, unknown 53.4
Nucleus accumbens
nTPM: 57.2
2391 Female, age 94, left hemisphere 59.9
1856 Female, age 91, right hemisphere 59.8
1783 Male, age 74, unknown 58.6
1806 Female, age 85, left hemisphere 57.7
2286 Male, age 75, left hemisphere 56.8
2824 Male, age 61, right hemisphere 56.0
2698 Female, age 72, unknown 55.3
2732 Male, age 80, right hemisphere 53.8
Nucleus basalis of Meynert
nTPM: 57.2
2484 Female, age 94, left hemisphere 59.8
2569 Male, age 61, both hemispheres 57.9
2821 Male, age 75, both hemispheres 56.7
2393 Male, age 80, right hemisphere 54.2
Nucleus of the diagonal band
nTPM: 65.4
2775 Male, age 80, right hemisphere 71.9
1812 Female, age 91, both hemispheres 68.2
2195 Female, age 85, both hemispheres 66.0
2029 Male, age 61, right hemisphere 65.1
1979 Male, age 74, unknown 55.7
Olfactory tubercle
nTPM: 66.2
1998 Female, age 91, both hemispheres 68.8
1846 Male, age 80, right hemisphere 68.7
2487 Female, age 94, left hemisphere 64.0
2856 Male, age 75, right hemisphere 63.4
Putamen
nTPM: 57.8
2482 Female, age 94, left hemisphere 61.2
2466 Female, age 79, unknown 59.5
1838 Male, age 80, right hemisphere 58.2
2647 Male, age 75, left hemisphere 57.6
1937 Female, age 91, right hemisphere 57.3
1829 Male, age 74, unknown 55.8
2489 Female, age 72, unknown 54.9
Septal nuclei
nTPM: 63.4
1960 Male, age 74, unknown 72.2
2031 Female, age 72, unknown 71.9
2009 Female, age 91, both hemispheres 63.6
2629 Female, age 94, right hemisphere 62.5
2394 Male, age 61, left hemisphere 60.9
2059 Female, age 85, both hemispheres 58.6
2199 Male, age 80, right hemisphere 54.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.5
Samples: 246

Max nTPM: 82.2
Min nTPM: 27.3
Std nTPM: 8.8
Median nTPM: 41.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 82.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 74.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 71.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 70.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 69.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 67.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 65.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 64.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 62.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 62.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 61.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.1
Samples: 246

Max nTPM: 87.5
Min nTPM: 27.2
Std nTPM: 8.6
Median nTPM: 43.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 87.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 75.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 75.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 75.3
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 67.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 66.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 66.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 66.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 63.1
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 62.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 61.2
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Brain - Putamen (basal ganglia)
Average nTPM: 44.1
Samples: 205

Max nTPM: 90.0
Min nTPM: 27.2
Std nTPM: 8.7
Median nTPM: 42.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 90.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 72.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 69.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 65.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 64.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 62.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 61.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 61.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 59.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 58.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 58.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 72.6
FF:10164-103B2 76 years, female 72.6
Globus pallidus
Scaled Tags Per Million: 80.4
FF:10175-103C4 60 years, female 90.7
FF:10161-103A8 76 years, female 70.1
Nucleus accumbens
Scaled Tags Per Million: 114.4
FF:10037-101F1 23-56 years, mixed 114.4
Putamen
Scaled Tags Per Million: 79.7
FF:10176-103C5 60 years, female 79.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 57.9
Pig sample Sample description nTPM
Caudate
nTPM: 39.1
Samples: 4

Max nTPM: 45.6
Min nTPM: 33.3
Sample A Female 33.3
Sample B Female 41.1
Sample C Male 45.6
Sample D Male 36.3
Putamen
nTPM: 57.9
Samples: 4

Max nTPM: 63.6
Min nTPM: 43.2
Sample A Female 62.2
Sample B Female 43.2
Sample C Male 63.6
Sample D Male 62.4
Septum
nTPM: 41.7
Samples: 4

Max nTPM: 46.1
Min nTPM: 38.0
Sample A Female 38.5
Sample B Female 38.0
Sample C Male 46.1
Sample D Male 44.3
Ventral pallidum
nTPM: 49.7
Samples: 4

Max nTPM: 72.3
Min nTPM: 34.0
Sample A Female 34.0
Sample B Female 43.8
Sample C Male 72.3
Sample D Male 48.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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