MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:91.8 nTPM
HPA:91.8 nTPM
GTEx:109.5 nTPM
FANTOM5:407.8 Scaled Tags Per Million
Pig:189.1 nTPM
Mouse:471.5 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 91.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.3
2666 Male, age 74, left hemisphere 80.3
1827 Male, age 72, unknown 76.6
2019 Male, age 18, unknown 75.8
2411 Female, age 72, unknown 73.3
2219 Male, age 76, both hemispheres 67.5
1870 Female, age 42, unknown 66.9
1833 Male, age 53, unknown 64.4
1830 Male, age 51, unknown 58.8
2828 Female, age 72, unknown 57.9
2586 Male, age 75, left hemisphere 41.2
Dorsal raphe nucleus
nTPM: 55.0
2750 Male, age 76, both hemispheres 67.3
1828 Male, age 53, unknown 58.5
2298 Female, age 72, unknown 55.5
2047 Male, age 72, unknown 53.1
2016 Female, age 72, unknown 40.4
Inferior colliculus
nTPM: 58.1
2097 Female, age 72, unknown 68.3
1890 Male, age 53, unknown 57.6
2849 Male, age 72, unknown 55.0
1848 Female, age 42, unknown 51.7
Median raphe nucleus
nTPM: 91.8
2220 Male, age 76, midline 91.8
Pedunculopontine tegmental nucleus
nTPM: 87.0
2334 Male, age 80, both hemispheres 95.7
2338 Male, age 61, both hemispheres 94.9
1921 Female, age 85, both hemispheres 70.4
Periaquaductal grey, anterior
nTPM: 53.4
1795 Male, age 51, unknown 55.8
1947 Male, age 18, unknown 52.8
2502 Female, age 75, unknown 51.6
Periaquaductal grey, dorsal
nTPM: 58.7
2850 Male, age 76, both hemispheres 76.1
1831 Male, age 72, unknown 66.3
1840 Male, age 53, unknown 46.7
2464 Female, age 72, unknown 45.7
Periaquaductal grey, lateral
nTPM: 60.4
2272 Male, age 74, both hemispheres 69.2
2053 Male, age 18, unknown 58.7
2140 Male, age 76, both hemispheres 53.2
Pretectal area
nTPM: 77.0
1816 Male, age 51, unknown 108.1
1817 Female, age 42, unknown 105.6
1815 Male, age 53, unknown 104.7
1944 Female, age 72, unknown 97.2
2007 Male, age 72, unknown 93.0
2224 Female, age 72, unknown 65.2
2273 Male, age 74, both hemispheres 61.1
2667 Female, age 75, unknown 61.1
2407 Male, age 75, both hemispheres 57.4
2825 Male, age 18, unknown 54.4
2316 Male, age 76, right hemisphere 39.7
Red nucleus
nTPM: 64.9
1821 Female, age 72, unknown 76.5
2725 Female, age 75, unknown 76.5
2785 Male, age 18, unknown 73.4
2584 Male, age 75, left hemisphere 71.4
1954 Female, age 42, unknown 67.6
2823 Male, age 76, right hemisphere 66.8
1865 Male, age 51, unknown 65.6
2588 Male, age 74, left hemisphere 65.2
2503 Female, age 72, unknown 63.1
1904 Male, age 53, unknown 56.8
2769 Male, age 72, unknown 48.4
2227 Male, age 72, unknown 47.1
Substantia nigra
nTPM: 78.6
1889 Female, age 72, unknown 95.7
2241 Male, age 72, unknown 90.7
1941 Male, age 53, unknown 86.0
1916 Female, age 42, unknown 80.4
2409 Female, age 72, unknown 78.8
1851 Male, age 51, unknown 75.9
2665 Male, age 74, both hemispheres 73.9
2699 Male, age 18, unknown 72.5
2590 Female, age 75, unknown 66.4
2583 Male, age 75, right hemisphere 65.4
Superior colliculus
nTPM: 63.2
2668 Female, age 75, unknown 77.7
2087 Female, age 72, unknown 73.8
2261 Male, age 18, unknown 72.0
1913 Female, age 42, unknown 69.3
2587 Male, age 74, left hemisphere 67.6
1796 Male, age 53, unknown 63.5
1995 Male, age 72, unknown 59.2
1895 Male, age 76, right hemisphere 54.6
1839 Male, age 51, unknown 53.7
2664 Male, age 75, both hemispheres 40.7
Ventral tegmental area
nTPM: 74.6
2218 Male, age 76, both hemispheres 95.9
2410 Female, age 72, unknown 80.4
2223 Female, age 72, unknown 78.3
1915 Female, age 42, unknown 71.4
1942 Male, age 51, unknown 61.6
2021 Male, age 53, unknown 59.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.5
Samples: 139

Max nTPM: 191.1
Min nTPM: 65.8
Std nTPM: 22.1
Median nTPM: 107.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 191.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 173.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 172.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 161.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 158.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 156.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 151.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 150.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 146.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 145.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 142.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 407.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 407.8
FF:10158-103A5 76 years, female 407.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 189.1
Pig sample Sample description nTPM
Midbrain
nTPM: 189.1
Samples: 4

Max nTPM: 221.4
Min nTPM: 167.4
Sample A Female 221.4
Sample B Female 167.4
Sample C Male 186.7
Sample D Male 181.0
Periaqueductal gray
nTPM: 147.8
Samples: 3

Max nTPM: 164.2
Min nTPM: 131.0
Sample B Female 148.1
Sample C Male 164.2
Sample D Male 131.0
Substantia nigra
nTPM: 165.6
Samples: 4

Max nTPM: 212.3
Min nTPM: 126.2
Sample A Female 212.3
Sample B Female 145.7
Sample C Male 178.1
Sample D Male 126.2
Superior colliculi
nTPM: 174.7
Samples: 4

Max nTPM: 202.0
Min nTPM: 132.6
Sample A Female 202.0
Sample B Female 132.6
Sample C Male 192.2
Sample D Male 171.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 471.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 471.5
Samples: 4

Max nTPM: 481.5
Min nTPM: 457.6
Sample A Male 457.6
Sample B Male 478.9
Sample C Female 481.5
Sample D Female 467.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
70429369 Antisense, RP_050614_01_E07, Mouse strain C57BL/6J (56 days, male) 15.2
75931623 Antisense, RP_060606_01_E09, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.