MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:982.1 nTPM
HPA:982.1 nTPM
GTEx:2013.5 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:424.8 nTPM
Mouse:624.8 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 982.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 967.1
2411 Female, age 72, unknown 991.7
1827 Male, age 72, unknown 987.5
2828 Female, age 72, unknown 981.0
2666 Male, age 74, left hemisphere 980.9
1870 Female, age 42, unknown 972.4
2019 Male, age 18, unknown 962.0
1830 Male, age 51, unknown 952.5
1833 Male, age 53, unknown 952.4
2219 Male, age 76, both hemispheres 945.4
2586 Male, age 75, left hemisphere 944.9
Dorsal raphe nucleus
nTPM: 963.7
2298 Female, age 72, unknown 992.0
2750 Male, age 76, both hemispheres 972.9
2016 Female, age 72, unknown 957.6
1828 Male, age 53, unknown 955.8
2047 Male, age 72, unknown 940.0
Inferior colliculus
nTPM: 963.1
2097 Female, age 72, unknown 986.3
1890 Male, age 53, unknown 971.4
1848 Female, age 42, unknown 950.2
2849 Male, age 72, unknown 944.6
Median raphe nucleus
nTPM: 959.4
2220 Male, age 76, midline 959.4
Pedunculopontine tegmental nucleus
nTPM: 971.3
2334 Male, age 80, both hemispheres 982.2
2338 Male, age 61, both hemispheres 966.5
1921 Female, age 85, both hemispheres 965.1
Periaquaductal grey, anterior
nTPM: 971.9
2502 Female, age 75, unknown 998.2
1947 Male, age 18, unknown 961.5
1795 Male, age 51, unknown 955.9
Periaquaductal grey, dorsal
nTPM: 960.4
1840 Male, age 53, unknown 972.3
2464 Female, age 72, unknown 964.0
1831 Male, age 72, unknown 961.1
2850 Male, age 76, both hemispheres 944.0
Periaquaductal grey, lateral
nTPM: 946.4
2053 Male, age 18, unknown 970.2
2140 Male, age 76, both hemispheres 936.4
2272 Male, age 74, both hemispheres 932.6
Pretectal area
nTPM: 970.3
1944 Female, age 72, unknown 999.1
1816 Male, age 51, unknown 998.9
1815 Male, age 53, unknown 990.5
1817 Female, age 42, unknown 986.3
2007 Male, age 72, unknown 974.0
2316 Male, age 76, right hemisphere 966.0
2224 Female, age 72, unknown 962.4
2407 Male, age 75, both hemispheres 953.4
2825 Male, age 18, unknown 952.4
2667 Female, age 75, unknown 946.9
2273 Male, age 74, both hemispheres 943.6
Red nucleus
nTPM: 969.4
2503 Female, age 72, unknown 1001.4
2584 Male, age 75, left hemisphere 979.4
1865 Male, age 51, unknown 976.1
1821 Female, age 72, unknown 975.3
2588 Male, age 74, left hemisphere 972.5
2725 Female, age 75, unknown 968.6
2227 Male, age 72, unknown 967.8
1904 Male, age 53, unknown 966.4
2785 Male, age 18, unknown 964.7
2769 Male, age 72, unknown 960.4
2823 Male, age 76, right hemisphere 950.8
1954 Female, age 42, unknown 948.7
Substantia nigra
nTPM: 979.0
2409 Female, age 72, unknown 1022.7
2241 Male, age 72, unknown 1004.2
1851 Male, age 51, unknown 1000.7
2665 Male, age 74, both hemispheres 991.3
1889 Female, age 72, unknown 986.6
2590 Female, age 75, unknown 968.1
1916 Female, age 42, unknown 961.9
2699 Male, age 18, unknown 960.7
1941 Male, age 53, unknown 956.1
2583 Male, age 75, right hemisphere 938.0
Superior colliculus
nTPM: 982.1
2261 Male, age 18, unknown 1008.6
2587 Male, age 74, left hemisphere 1001.5
1913 Female, age 42, unknown 993.9
2668 Female, age 75, unknown 989.5
2087 Female, age 72, unknown 987.1
1995 Male, age 72, unknown 986.4
1796 Male, age 53, unknown 982.7
1895 Male, age 76, right hemisphere 971.0
1839 Male, age 51, unknown 956.9
2664 Male, age 75, both hemispheres 943.0
Ventral tegmental area
nTPM: 970.5
2410 Female, age 72, unknown 982.4
1915 Female, age 42, unknown 979.9
2223 Female, age 72, unknown 972.4
2021 Male, age 53, unknown 971.0
1942 Male, age 51, unknown 968.8
2218 Male, age 76, both hemispheres 948.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2013.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2013.5
Samples: 139

Max nTPM: 8026.9
Min nTPM: 761.6
Std nTPM: 954.0
Median nTPM: 1755.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 8026.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6029.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4823.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 4317.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4257.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3562.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3559.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 3493.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3389.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 3339.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 3305.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.9
FF:10158-103A5 76 years, female 29.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 424.8
Pig sample Sample description nTPM
Midbrain
nTPM: 411.3
Samples: 4

Max nTPM: 556.8
Min nTPM: 288.0
Sample A Female 556.8
Sample B Female 465.4
Sample C Male 334.8
Sample D Male 288.0
Periaqueductal gray
nTPM: 328.7
Samples: 3

Max nTPM: 350.8
Min nTPM: 300.4
Sample B Female 350.8
Sample C Male 334.9
Sample D Male 300.4
Substantia nigra
nTPM: 424.8
Samples: 4

Max nTPM: 595.3
Min nTPM: 309.7
Sample A Female 595.3
Sample B Female 446.1
Sample C Male 348.2
Sample D Male 309.7
Superior colliculi
nTPM: 422.3
Samples: 4

Max nTPM: 514.4
Min nTPM: 367.7
Sample A Female 514.4
Sample B Female 398.6
Sample C Male 408.6
Sample D Male 367.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 624.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 624.9
Samples: 4

Max nTPM: 673.9
Min nTPM: 592.1
Sample A Male 673.9
Sample B Male 609.4
Sample C Female 592.1
Sample D Female 624.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
68744869 Antisense, RP_050208_01_G10, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.