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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:456.3 nTPM
HPA:456.3 nTPM
GTEx:459.2 nTPM
FANTOM5:1229.8 Scaled Tags Per Million
Pig:509.2 nTPM
Mouse:1505.0 nTPM
Allen mouse:26.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 456.3
Sample id Sample description nTPM
Amygdala
nTPM: 454.4
2814 Male, age 76, right hemisphere 492.3
2514 Male, age 75, right hemisphere 467.9
1987 Female, age 91, left hemisphere 457.5
2517 Female, age 94, left hemisphere 433.3
2695 Female, age 67, right hemisphere 421.2
Basal amygdala
nTPM: 395.8
2110 Male, age 80, left hemisphere 456.0
2609 Male, age 75, right hemisphere 430.5
2243 Female, age 91, right hemisphere 427.5
1955 Male, age 76, both hemispheres 408.8
2685 Female, age 94, left hemisphere 368.5
2827 Female, age 67, right hemisphere 283.5
Central amygdala
nTPM: 416.9
1905 Male, age 76, both hemispheres 453.8
2239 Male, age 80, left hemisphere 432.3
2515 Male, age 75, right hemisphere 422.9
2826 Female, age 94, left hemisphere 390.5
2701 Female, age 91, right hemisphere 385.2
Corticomedial amygdala
nTPM: 412.0
2829 Male, age 80, left hemisphere 467.3
2240 Male, age 76, both hemispheres 444.7
2428 Male, age 75, right hemisphere 434.7
2242 Female, age 91, right hemisphere 421.6
2429 Female, age 94, left hemisphere 399.1
2535 Female, age 67, right hemisphere 304.7
Lateral amygdala
nTPM: 386.0
1883 Male, age 76, both hemispheres 482.4
2516 Male, age 75, right hemisphere 436.2
2534 Female, age 94, left hemisphere 390.0
2256 Male, age 80, left hemisphere 365.3
2255 Female, age 91, right hemisphere 344.3
2830 Female, age 67, right hemisphere 297.9
Stria terminalis, bed nucleus
nTPM: 456.3
1974 Female, age 91, both hemispheres 520.2
2201 Male, age 74, unknown 453.6
2486 Female, age 94, both hemispheres 395.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 459.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 459.2
Samples: 152

Max nTPM: 2134.3
Min nTPM: 215.9
Std nTPM: 240.5
Median nTPM: 404.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2134.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1637.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1251.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1134.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 963.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 864.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 856.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 831.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 813.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 812.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 758.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 739.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 735.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 699.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 694.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 683.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 659.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 647.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 645.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 613.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 605.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 605.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 592.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 586.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 586.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 583.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 576.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 576.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 575.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 573.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 568.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 567.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 563.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 554.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 551.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 546.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 540.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 537.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 532.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 521.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 515.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 512.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 506.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 488.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 486.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 486.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 484.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 480.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 480.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 468.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 465.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 464.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 456.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 455.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 454.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 454.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 448.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 439.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 438.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 438.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 436.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 432.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 429.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 427.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 426.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 424.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 424.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 423.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 420.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 417.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 416.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 415.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 413.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 410.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 409.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 408.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 401.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 398.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 394.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 393.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 393.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 390.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 390.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 385.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 383.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 380.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 377.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 369.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 367.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 366.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 366.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 360.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 358.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 356.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 356.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 356.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 356.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 352.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 351.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 349.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 347.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 346.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 345.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 341.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 339.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 338.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 337.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 336.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 333.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 332.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 331.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 324.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 323.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 322.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 321.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 320.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 319.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 319.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 318.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 314.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 312.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 311.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 310.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 304.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 303.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 303.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 301.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 300.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 299.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 291.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 286.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 286.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 285.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 280.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 280.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 277.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 271.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 269.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 261.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 259.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 255.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 243.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 241.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 236.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 235.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 225.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 221.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 221.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 218.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 218.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 217.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 215.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1229.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1229.8
FF:10151-102I7 76 years, female 1229.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 509.2
Pig sample Sample description nTPM
Amygdala
nTPM: 509.2
Samples: 4

Max nTPM: 696.2
Min nTPM: 420.6
Sample A Female 696.2
Sample B Female 463.7
Sample C Male 420.6
Sample D Male 456.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1505.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 1505.0
Samples: 4

Max nTPM: 1558.6
Min nTPM: 1419.1
Sample A Male 1539.3
Sample B Male 1558.6
Sample C Female 1419.1
Sample D Female 1503.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 26.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.9
75694450 Antisense, RP_060518_03_G08, Mouse strain C57BL/6J (56 days, male) 26.9

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