MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:564.2 nTPM
HPA:564.2 nTPM
GTEx:629.7 nTPM
FANTOM5:1391.6 Scaled Tags Per Million
Pig:1025.5 nTPM
Mouse:1799.2 nTPM
Allen mouse:21.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 564.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 479.5
2219 Male, age 76, both hemispheres 678.5
2019 Male, age 18, unknown 559.4
2411 Female, age 72, unknown 532.2
1827 Male, age 72, unknown 480.3
1870 Female, age 42, unknown 455.1
1833 Male, age 53, unknown 445.7
2828 Female, age 72, unknown 431.4
1830 Male, age 51, unknown 429.0
2666 Male, age 74, left hemisphere 405.9
2586 Male, age 75, left hemisphere 377.2
Dorsal raphe nucleus
nTPM: 513.8
2298 Female, age 72, unknown 606.1
2047 Male, age 72, unknown 541.5
1828 Male, age 53, unknown 515.6
2750 Male, age 76, both hemispheres 461.4
2016 Female, age 72, unknown 444.3
Inferior colliculus
nTPM: 461.2
2097 Female, age 72, unknown 497.7
1848 Female, age 42, unknown 458.0
1890 Male, age 53, unknown 456.6
2849 Male, age 72, unknown 432.3
Median raphe nucleus
nTPM: 510.5
2220 Male, age 76, midline 510.5
Pedunculopontine tegmental nucleus
nTPM: 504.2
2334 Male, age 80, both hemispheres 517.7
2338 Male, age 61, both hemispheres 506.2
1921 Female, age 85, both hemispheres 488.6
Periaquaductal grey, anterior
nTPM: 456.8
1947 Male, age 18, unknown 471.1
1795 Male, age 51, unknown 459.0
2502 Female, age 75, unknown 440.3
Periaquaductal grey, dorsal
nTPM: 441.5
1840 Male, age 53, unknown 462.0
2850 Male, age 76, both hemispheres 443.5
2464 Female, age 72, unknown 430.8
1831 Male, age 72, unknown 429.7
Periaquaductal grey, lateral
nTPM: 433.5
2272 Male, age 74, both hemispheres 494.5
2053 Male, age 18, unknown 405.6
2140 Male, age 76, both hemispheres 400.4
Pretectal area
nTPM: 511.6
1944 Female, age 72, unknown 594.2
1817 Female, age 42, unknown 588.4
2007 Male, age 72, unknown 574.0
1816 Male, age 51, unknown 556.3
2667 Female, age 75, unknown 536.1
2273 Male, age 74, both hemispheres 516.8
1815 Male, age 53, unknown 515.0
2224 Female, age 72, unknown 509.4
2407 Male, age 75, both hemispheres 465.3
2825 Male, age 18, unknown 419.9
2316 Male, age 76, right hemisphere 352.3
Red nucleus
nTPM: 452.2
1821 Female, age 72, unknown 533.8
2785 Male, age 18, unknown 509.1
1954 Female, age 42, unknown 475.2
1865 Male, age 51, unknown 470.6
2725 Female, age 75, unknown 462.3
1904 Male, age 53, unknown 452.1
2503 Female, age 72, unknown 450.5
2769 Male, age 72, unknown 431.1
2227 Male, age 72, unknown 428.5
2588 Male, age 74, left hemisphere 413.0
2584 Male, age 75, left hemisphere 407.9
2823 Male, age 76, right hemisphere 392.5
Substantia nigra
nTPM: 564.2
1916 Female, age 42, unknown 701.7
2241 Male, age 72, unknown 641.8
1851 Male, age 51, unknown 609.8
1941 Male, age 53, unknown 606.2
1889 Female, age 72, unknown 588.0
2409 Female, age 72, unknown 577.1
2699 Male, age 18, unknown 490.5
2590 Female, age 75, unknown 489.5
2665 Male, age 74, both hemispheres 476.3
2583 Male, age 75, right hemisphere 461.4
Superior colliculus
nTPM: 447.4
2087 Female, age 72, unknown 516.6
2587 Male, age 74, left hemisphere 487.3
2668 Female, age 75, unknown 478.0
1796 Male, age 53, unknown 473.5
2261 Male, age 18, unknown 465.3
1895 Male, age 76, right hemisphere 428.9
1839 Male, age 51, unknown 423.1
1913 Female, age 42, unknown 415.9
2664 Male, age 75, both hemispheres 398.1
1995 Male, age 72, unknown 387.0
Ventral tegmental area
nTPM: 523.8
2410 Female, age 72, unknown 638.6
2218 Male, age 76, both hemispheres 555.5
1915 Female, age 42, unknown 554.0
2223 Female, age 72, unknown 480.6
1942 Male, age 51, unknown 475.4
2021 Male, age 53, unknown 438.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 629.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 629.7
Samples: 139

Max nTPM: 1729.9
Min nTPM: 242.5
Std nTPM: 278.5
Median nTPM: 553.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1729.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1522.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1508.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1502.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1398.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1243.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1197.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1161.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1140.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1130.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1101.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1391.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1391.6
FF:10158-103A5 76 years, female 1391.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 1025.5
Pig sample Sample description nTPM
Midbrain
nTPM: 970.1
Samples: 4

Max nTPM: 1213.7
Min nTPM: 815.2
Sample A Female 975.7
Sample B Female 815.2
Sample C Male 1213.7
Sample D Male 875.9
Periaqueductal gray
nTPM: 745.6
Samples: 3

Max nTPM: 825.1
Min nTPM: 696.2
Sample B Female 696.2
Sample C Male 825.1
Sample D Male 715.4
Substantia nigra
nTPM: 931.0
Samples: 4

Max nTPM: 1352.7
Min nTPM: 644.1
Sample A Female 1352.7
Sample B Female 743.6
Sample C Male 983.5
Sample D Male 644.1
Superior colliculi
nTPM: 1025.5
Samples: 4

Max nTPM: 1341.3
Min nTPM: 724.4
Sample A Female 1072.5
Sample B Female 724.4
Sample C Male 1341.3
Sample D Male 963.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1799.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 1799.2
Samples: 4

Max nTPM: 1854.2
Min nTPM: 1684.1
Sample A Male 1684.1
Sample B Male 1854.2
Sample C Female 1836.4
Sample D Female 1822.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.2
75694450 Antisense, RP_060518_03_G08, Mouse strain C57BL/6J (56 days, male) 21.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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