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EIF4G2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:177.4 nTPM
HPA:177.4 nTPM
GTEx:176.9 nTPM
FANTOM5:1004.5 Scaled Tags Per Million
Pig:213.5 nTPM
Mouse:273.1 nTPM
Allen mouse:10.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 177.4
Sample id Sample description nTPM
Amygdala
nTPM: 177.4
2814 Male, age 76, right hemisphere 194.7
2695 Female, age 67, right hemisphere 191.2
2514 Male, age 75, right hemisphere 181.1
1987 Female, age 91, left hemisphere 164.5
2517 Female, age 94, left hemisphere 155.3
Basal amygdala
nTPM: 156.3
2609 Male, age 75, right hemisphere 180.4
2685 Female, age 94, left hemisphere 160.2
1955 Male, age 76, both hemispheres 158.5
2110 Male, age 80, left hemisphere 150.0
2243 Female, age 91, right hemisphere 145.2
2827 Female, age 67, right hemisphere 143.5
Central amygdala
nTPM: 168.6
2515 Male, age 75, right hemisphere 193.3
1905 Male, age 76, both hemispheres 183.3
2826 Female, age 94, left hemisphere 165.0
2239 Male, age 80, left hemisphere 151.4
2701 Female, age 91, right hemisphere 150.1
Corticomedial amygdala
nTPM: 151.0
2428 Male, age 75, right hemisphere 172.0
2240 Male, age 76, both hemispheres 156.7
2829 Male, age 80, left hemisphere 156.5
2242 Female, age 91, right hemisphere 143.5
2429 Female, age 94, left hemisphere 141.3
2535 Female, age 67, right hemisphere 135.9
Lateral amygdala
nTPM: 163.5
2516 Male, age 75, right hemisphere 184.0
1883 Male, age 76, both hemispheres 180.6
2534 Female, age 94, left hemisphere 163.5
2255 Female, age 91, right hemisphere 155.4
2256 Male, age 80, left hemisphere 151.3
2830 Female, age 67, right hemisphere 146.1
Stria terminalis, bed nucleus
nTPM: 148.4
1974 Female, age 91, both hemispheres 157.1
2201 Male, age 74, unknown 146.8
2486 Female, age 94, both hemispheres 141.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 176.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 176.9
Samples: 152

Max nTPM: 318.7
Min nTPM: 112.0
Std nTPM: 30.4
Median nTPM: 173.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 318.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 295.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 249.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 237.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 230.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 228.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 225.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 224.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 221.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 220.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 219.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 215.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 214.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 213.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 213.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 212.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 211.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 211.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 210.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 209.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 209.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 209.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 209.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 208.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 207.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 206.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 206.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 204.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 203.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 203.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 203.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 201.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 200.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 200.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 196.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 196.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 195.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 193.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 193.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 193.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 192.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 192.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 191.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 189.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 189.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 187.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 187.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 187.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 186.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 185.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 185.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 185.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 184.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 183.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 183.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 182.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 182.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 181.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 180.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 180.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 180.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 180.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 179.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 179.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 179.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 178.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 178.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 178.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 177.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 177.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 176.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 175.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 175.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 174.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 174.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 173.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 172.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 171.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 170.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 170.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 170.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 169.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 168.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 167.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 167.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 167.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 167.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 166.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 166.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 166.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 166.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 166.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 166.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 165.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 165.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 165.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 164.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 162.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 161.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 161.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 161.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 161.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 161.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 160.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 160.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 160.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 158.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 157.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 157.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 156.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 156.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 156.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 156.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 156.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 155.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 155.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 155.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 155.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 155.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 155.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 155.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 155.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 154.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 153.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 152.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 151.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 150.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 148.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 146.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 145.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 145.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 145.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 144.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 143.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 141.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 137.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 137.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 136.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 136.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 136.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 134.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 134.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 134.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 132.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 130.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 129.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 127.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 126.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 117.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 112.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1004.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1004.5
FF:10151-102I7 76 years, female 1004.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.5
Pig sample Sample description nTPM
Amygdala
nTPM: 213.6
Samples: 4

Max nTPM: 266.3
Min nTPM: 187.0
Sample A Female 266.3
Sample B Female 213.3
Sample C Male 187.6
Sample D Male 187.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 273.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 273.1
Samples: 4

Max nTPM: 278.9
Min nTPM: 267.8
Sample A Male 272.9
Sample B Male 267.8
Sample C Female 272.8
Sample D Female 278.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.3
69671965 Antisense, RP_050428_02_G01, Mouse strain C57BL/6J (56 days, male) 20.6
70795766 Antisense, RP_050712_01_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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