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CD81
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  • CD81
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:560.6 nTPM
HPA:560.6 nTPM
GTEx:527.4 nTPM
FANTOM5:524.5 Scaled Tags Per Million
Pig:260.8 nTPM
Mouse:370.8 nTPM
Allen mouse:10.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 560.6
Sample id Sample description nTPM
Amygdala
nTPM: 560.6
2695 Female, age 67, right hemisphere 621.3
1987 Female, age 91, left hemisphere 588.8
2814 Male, age 76, right hemisphere 554.5
2514 Male, age 75, right hemisphere 527.7
2517 Female, age 94, left hemisphere 510.8
Basal amygdala
nTPM: 495.9
2609 Male, age 75, right hemisphere 531.0
1955 Male, age 76, both hemispheres 528.2
2110 Male, age 80, left hemisphere 514.6
2243 Female, age 91, right hemisphere 494.8
2685 Female, age 94, left hemisphere 472.6
2827 Female, age 67, right hemisphere 434.0
Central amygdala
nTPM: 537.3
2515 Male, age 75, right hemisphere 579.5
1905 Male, age 76, both hemispheres 575.0
2826 Female, age 94, left hemisphere 551.2
2701 Female, age 91, right hemisphere 492.7
2239 Male, age 80, left hemisphere 488.1
Corticomedial amygdala
nTPM: 490.6
2428 Male, age 75, right hemisphere 549.0
2242 Female, age 91, right hemisphere 520.2
2829 Male, age 80, left hemisphere 496.0
2240 Male, age 76, both hemispheres 488.8
2429 Female, age 94, left hemisphere 461.5
2535 Female, age 67, right hemisphere 427.8
Lateral amygdala
nTPM: 514.6
1883 Male, age 76, both hemispheres 537.5
2516 Male, age 75, right hemisphere 532.8
2256 Male, age 80, left hemisphere 530.5
2534 Female, age 94, left hemisphere 519.0
2255 Female, age 91, right hemisphere 503.4
2830 Female, age 67, right hemisphere 464.2
Stria terminalis, bed nucleus
nTPM: 472.4
2201 Male, age 74, unknown 494.7
1974 Female, age 91, both hemispheres 462.7
2486 Female, age 94, both hemispheres 459.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 527.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 527.4
Samples: 152

Max nTPM: 1281.0
Min nTPM: 264.6
Std nTPM: 158.4
Median nTPM: 510.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1281.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1062.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1041.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 925.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 865.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 857.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 840.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 839.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 827.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 809.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 745.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 735.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 735.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 726.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 723.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 720.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 710.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 702.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 693.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 692.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 672.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 664.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 658.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 656.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 641.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 634.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 630.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 629.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 628.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 628.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 626.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 622.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 621.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 621.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 620.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 615.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 612.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 610.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 599.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 597.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 597.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 596.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 596.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 587.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 587.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 586.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 584.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 577.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 577.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 576.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 572.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 571.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 565.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 556.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 554.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 550.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 548.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 545.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 544.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 540.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 539.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 539.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 535.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 534.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 534.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 528.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 527.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 523.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 520.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 520.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 520.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 517.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 517.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 515.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 513.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 512.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 508.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 500.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 498.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 495.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 491.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 485.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 484.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 483.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 474.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 472.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 471.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 468.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 467.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 467.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 467.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 466.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 464.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 462.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 462.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 458.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 458.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 458.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 457.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 456.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 448.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 447.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 445.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 444.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 437.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 436.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 435.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 433.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 432.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 430.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 426.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 426.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 426.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 426.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 424.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 423.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 423.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 413.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 412.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 410.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 410.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 407.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 405.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 402.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 402.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 401.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 398.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 395.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 383.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 380.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 378.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 370.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 369.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 362.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 359.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 358.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 355.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 353.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 342.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 340.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 332.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 330.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 325.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 320.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 320.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 319.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 305.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 293.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 287.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 285.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 266.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 264.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 524.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 524.5
FF:10151-102I7 76 years, female 524.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 260.8
Pig sample Sample description nTPM
Amygdala
nTPM: 260.8
Samples: 4

Max nTPM: 320.3
Min nTPM: 225.5
Sample A Female 320.3
Sample B Female 242.0
Sample C Male 225.5
Sample D Male 255.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 370.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 370.8
Samples: 4

Max nTPM: 400.0
Min nTPM: 349.2
Sample A Male 367.8
Sample B Male 349.2
Sample C Female 400.0
Sample D Female 366.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.2
68269526 Antisense, RP_041129_01_G04, Mouse strain C57BL/6J (56 days, male) 11.5
227 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 9.0
226 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 8.2

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