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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:694.1 nTPM
HPA:694.1 nTPM
GTEx:513.7 nTPM
FANTOM5:794.9 Scaled Tags Per Million
Pig:687.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 694.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 649.8
1981 Female, age 72, midline 765.6
2565 Male, age 75, midline 657.3
2048 Male, age 55, midline 628.7
2816 Male, age 47, midline 599.8
2194 Female, age 79, both hemispheres 597.7
Cervical spinal cord, dorsal horn
nTPM: 631.8
2173 Female, age 72, unknown 748.4
2069 Male, age 47, both hemispheres 662.3
2296 Male, age 66, both hemispheres 626.8
2721 Male, age 90, both hemispheres 616.3
1877 Male, age 55, unknown 604.3
2297 Male, age 75, both hemispheres 532.7
Cervical spinal cord, ventral horn
nTPM: 694.1
2098 Female, age 72, unknown 858.6
2809 Male, age 90, both hemispheres 816.6
2295 Male, age 66, both hemispheres 737.6
2480 Male, age 75, both hemispheres 628.9
2068 Male, age 55, unknown 599.2
2820 Female, age 79, both hemispheres 523.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 513.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 513.7
Samples: 159

Max nTPM: 1103.1
Min nTPM: 290.9
Std nTPM: 123.1
Median nTPM: 486.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1103.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 905.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 860.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 856.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 777.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 777.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 749.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 747.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 743.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 740.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 728.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 721.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 718.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 714.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 710.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 706.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 682.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 673.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 656.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 644.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 642.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 630.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 628.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 628.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 619.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 617.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 611.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 607.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 597.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 595.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 590.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 589.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 589.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 588.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 584.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 582.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 581.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 578.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 578.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 577.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 577.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 574.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 570.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 568.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 566.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 561.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 558.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 556.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 553.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 549.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 548.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 546.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 546.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 541.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 533.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 532.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 526.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 525.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 523.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 522.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 512.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 511.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 509.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 508.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 503.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 503.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 503.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 502.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 502.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 499.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 497.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 497.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 497.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 496.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 494.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 494.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 493.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 491.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 487.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 486.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 485.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 485.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 483.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 482.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 482.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 479.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 478.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 478.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 477.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 473.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 471.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 470.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 467.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 467.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 466.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 466.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 464.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 463.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 459.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 458.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 456.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 455.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 453.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 447.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 446.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 446.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 445.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 444.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 442.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 442.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 441.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 441.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 434.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 434.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 433.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 432.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 429.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 427.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 427.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 426.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 426.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 425.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 425.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 425.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 425.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 422.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 421.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 421.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 421.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 420.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 419.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 416.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 414.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 414.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 412.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 411.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 407.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 402.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 389.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 386.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 386.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 385.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 382.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 381.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 380.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 378.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 376.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 367.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 367.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 366.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 364.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 363.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 363.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 362.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 357.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 350.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 335.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 322.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 290.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 794.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 794.9
FF:10181-103D1 60 years, female 911.9
FF:10159-103A6 76 years, female 677.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 687.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 607.2
Samples: 4

Max nTPM: 671.8
Min nTPM: 542.7
Sample A Female 542.7
Sample B Female 606.9
Sample C Male 671.8
Sample D Male 607.4
Ventral spinal cord
nTPM: 688.0
Samples: 4

Max nTPM: 739.6
Min nTPM: 669.0
Sample A Female 672.6
Sample B Female 670.6
Sample C Male 669.0
Sample D Male 739.6

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