MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:640.8 nTPM
HPA:640.8 nTPM
GTEx:738.0 nTPM
FANTOM5:767.0 Scaled Tags Per Million
Pig:555.6 nTPM
Mouse:616.2 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 640.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 571.7
2586 Male, age 75, left hemisphere 657.1
2828 Female, age 72, unknown 655.7
2411 Female, age 72, unknown 577.7
2666 Male, age 74, left hemisphere 572.1
1870 Female, age 42, unknown 570.7
1827 Male, age 72, unknown 565.0
1833 Male, age 53, unknown 550.0
2019 Male, age 18, unknown 548.8
1830 Male, age 51, unknown 537.2
2219 Male, age 76, both hemispheres 482.7
Dorsal raphe nucleus
nTPM: 632.7
2298 Female, age 72, unknown 707.0
2016 Female, age 72, unknown 680.2
1828 Male, age 53, unknown 603.5
2047 Male, age 72, unknown 594.7
2750 Male, age 76, both hemispheres 578.1
Inferior colliculus
nTPM: 567.1
2097 Female, age 72, unknown 601.4
1890 Male, age 53, unknown 569.5
1848 Female, age 42, unknown 563.6
2849 Male, age 72, unknown 533.9
Median raphe nucleus
nTPM: 518.1
2220 Male, age 76, midline 518.1
Pedunculopontine tegmental nucleus
nTPM: 539.3
1921 Female, age 85, both hemispheres 548.0
2334 Male, age 80, both hemispheres 547.2
2338 Male, age 61, both hemispheres 522.8
Periaquaductal grey, anterior
nTPM: 628.0
1795 Male, age 51, unknown 655.3
1947 Male, age 18, unknown 628.6
2502 Female, age 75, unknown 600.1
Periaquaductal grey, dorsal
nTPM: 613.7
2850 Male, age 76, both hemispheres 635.1
1840 Male, age 53, unknown 632.8
2464 Female, age 72, unknown 603.1
1831 Male, age 72, unknown 583.8
Periaquaductal grey, lateral
nTPM: 640.8
2140 Male, age 76, both hemispheres 668.4
2053 Male, age 18, unknown 630.9
2272 Male, age 74, both hemispheres 623.2
Pretectal area
nTPM: 595.6
2273 Male, age 74, both hemispheres 673.6
2316 Male, age 76, right hemisphere 619.0
2224 Female, age 72, unknown 615.2
2825 Male, age 18, unknown 601.1
2667 Female, age 75, unknown 599.0
1817 Female, age 42, unknown 595.9
1815 Male, age 53, unknown 588.9
1944 Female, age 72, unknown 584.8
2007 Male, age 72, unknown 567.0
1816 Male, age 51, unknown 566.3
2407 Male, age 75, both hemispheres 540.5
Red nucleus
nTPM: 584.2
2503 Female, age 72, unknown 637.7
2227 Male, age 72, unknown 624.4
2769 Male, age 72, unknown 619.1
1954 Female, age 42, unknown 598.9
1821 Female, age 72, unknown 591.4
1904 Male, age 53, unknown 590.1
1865 Male, age 51, unknown 585.7
2725 Female, age 75, unknown 585.5
2785 Male, age 18, unknown 570.1
2823 Male, age 76, right hemisphere 557.9
2588 Male, age 74, left hemisphere 542.9
2584 Male, age 75, left hemisphere 506.7
Substantia nigra
nTPM: 571.0
1851 Male, age 51, unknown 605.3
2590 Female, age 75, unknown 598.6
1916 Female, age 42, unknown 595.2
2699 Male, age 18, unknown 586.9
2583 Male, age 75, right hemisphere 572.4
2665 Male, age 74, both hemispheres 570.8
1889 Female, age 72, unknown 568.3
2241 Male, age 72, unknown 543.7
2409 Female, age 72, unknown 534.7
1941 Male, age 53, unknown 534.4
Superior colliculus
nTPM: 590.7
1995 Male, age 72, unknown 679.9
1796 Male, age 53, unknown 617.5
2087 Female, age 72, unknown 606.3
2261 Male, age 18, unknown 603.3
2664 Male, age 75, both hemispheres 592.1
1913 Female, age 42, unknown 591.1
2668 Female, age 75, unknown 575.2
2587 Male, age 74, left hemisphere 575.1
1839 Male, age 51, unknown 559.4
1895 Male, age 76, right hemisphere 507.4
Ventral tegmental area
nTPM: 591.6
2021 Male, age 53, unknown 621.7
1942 Male, age 51, unknown 621.3
2410 Female, age 72, unknown 608.4
1915 Female, age 42, unknown 595.2
2218 Male, age 76, both hemispheres 557.1
2223 Female, age 72, unknown 546.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 738.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 738.0
Samples: 139

Max nTPM: 1803.2
Min nTPM: 266.4
Std nTPM: 286.9
Median nTPM: 683.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1803.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1769.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1691.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1685.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1571.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1539.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1404.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1225.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1146.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1112.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 1102.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 767.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 767.0
FF:10158-103A5 76 years, female 767.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 555.6
Pig sample Sample description nTPM
Midbrain
nTPM: 500.1
Samples: 4

Max nTPM: 859.4
Min nTPM: 340.3
Sample A Female 859.4
Sample B Female 421.2
Sample C Male 379.5
Sample D Male 340.3
Periaqueductal gray
nTPM: 460.8
Samples: 3

Max nTPM: 539.5
Min nTPM: 409.6
Sample B Female 433.3
Sample C Male 539.5
Sample D Male 409.6
Substantia nigra
nTPM: 555.6
Samples: 4

Max nTPM: 634.5
Min nTPM: 443.0
Sample A Female 634.5
Sample B Female 443.0
Sample C Male 525.4
Sample D Male 619.4
Superior colliculi
nTPM: 417.6
Samples: 4

Max nTPM: 547.1
Min nTPM: 291.4
Sample A Female 547.1
Sample B Female 291.4
Sample C Male 385.7
Sample D Male 446.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 616.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 616.2
Samples: 4

Max nTPM: 636.2
Min nTPM: 578.8
Sample A Male 628.4
Sample B Male 578.8
Sample C Female 621.4
Sample D Female 636.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
227 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 12.1
68269526 Antisense, RP_041129_01_G04, Mouse strain C57BL/6J (56 days, male) 12.1
226 Antisense, RP_Baylor_102672, Mouse strain C57BL/6J (56 days, male) 9.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.