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RPS13
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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:856.5 nTPM
HPA:856.5 nTPM
FANTOM5:193.3 Scaled Tags Per Million
Pig:221.7 nTPM
Mouse:331.6 nTPM
Allen mouse:0.2 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 856.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 803.9
2396 Male, age 61, right hemisphere 822.6
2032 Female, age 42, unknown 794.9
2497 Male, age 66, unknown 794.2
Centromedial thalamic nucleus
nTPM: 793.8
2401 Male, age 76, right hemisphere 806.0
2279 Female, age 85, left hemisphere 781.5
Habenula
nTPM: 802.7
1957 Male, age 80, both hemispheres 830.1
2252 Male, age 62, unknown 797.6
2203 Male, age 61, left hemisphere 796.5
2276 Male, age 66, unknown 786.5
Lateral geniculate body
nTPM: 809.1
2575 Female, age 94, right hemisphere 849.5
2857 Male, age 74, right hemisphere 821.9
2841 Male, age 80, both hemispheres 816.9
1953 Male, age 62, unknown 808.5
2035 Female, age 72, unknown 807.9
2106 Female, age 67, right hemisphere 794.8
2399 Male, age 61, left hemisphere 787.3
2659 Male, age 66, unknown 786.4
Lateral thalamic nuclei
nTPM: 823.7
2765 Female, age 67, both hemispheres 849.1
2573 Female, age 94, left hemisphere 829.8
2577 Male, age 74, both hemispheres 823.5
2661 Female, age 72, unknown 821.1
1903 Male, age 76, left hemisphere 794.8
Medial dorsal thalamic nucleus
nTPM: 810.1
2572 Female, age 94, right hemisphere 894.0
2039 Female, age 72, unknown 820.7
1810 Male, age 48, unknown 820.2
1930 Female, age 42, unknown 814.9
2402 Female, age 67, both hemispheres 812.8
2026 Male, age 62, unknown 809.4
1859 Male, age 76, both hemispheres 806.7
2576 Male, age 74, both hemispheres 800.9
2498 Male, age 66, unknown 797.3
1971 Male, age 61, right hemisphere 795.6
2660 Female, age 72, unknown 788.2
2492 Male, age 75, right hemisphere 786.6
2283 Male, age 80, right hemisphere 784.2
Medial geniculate body
nTPM: 814.6
2571 Male, age 75, right hemisphere 841.8
2049 Male, age 76, both hemispheres 836.1
2650 Female, age 94, left hemisphere 824.6
1811 Female, age 42, unknown 809.2
2207 Male, age 80, right hemisphere 803.2
2657 Male, age 74, right hemisphere 800.7
2217 Female, age 72, unknown 786.9
Nucleus reuniens
nTPM: 814.5
2212 Female, age 67, left hemisphere 821.6
2205 Male, age 80, left hemisphere 812.8
2210 Female, age 85, left hemisphere 809.0
Nucleus rhomboideus
nTPM: 802.2
2213 Female, age 67, left hemisphere 821.5
2206 Male, age 80, both hemispheres 799.7
2280 Female, age 85, left hemisphere 785.5
Posterior thalamic nucleus
nTPM: 856.5
2649 Female, age 94, both hemispheres 1005.4
2655 Male, age 74, right hemisphere 825.8
2266 Male, age 76, right hemisphere 806.8
2495 Female, age 67, right hemisphere 787.8
Pulvinar
nTPM: 802.7
2496 Female, age 67, right hemisphere 823.1
2499 Male, age 66, unknown 816.7
1932 Male, age 80, right hemisphere 808.5
2214 Male, age 76, right hemisphere 806.5
2724 Male, age 74, right hemisphere 803.5
1929 Male, age 48, unknown 803.1
1972 Male, age 62, unknown 802.3
2582 Female, age 72, unknown 793.4
2398 Male, age 61, left hemisphere 787.0
1899 Female, age 42, unknown 783.2
Subthalamic nucleus
nTPM: 804.0
2658 Male, age 74, both hemispheres 817.7
2124 Male, age 62, unknown 815.6
2275 Male, age 66, unknown 814.0
2056 Female, age 72, unknown 813.9
2779 Female, age 42, unknown 802.7
2282 Male, age 61, both hemispheres 798.7
2216 Male, age 48, unknown 786.0
2406 Female, age 72, unknown 783.7
Ventral posterolateral thalamic nucleus
nTPM: 797.3
2197 Male, age 80, both hemispheres 821.4
2578 Male, age 74, both hemispheres 814.5
2740 Male, age 76, right hemisphere 796.8
2570 Male, age 75, right hemisphere 791.7
2397 Male, age 61, right hemisphere 786.7
2581 Female, age 72, unknown 772.8
Ventral posteromedial thalamic nucleus
nTPM: 796.2
2653 Male, age 74, both hemispheres 810.9
2127 Male, age 76, right hemisphere 800.7
2202 Male, age 61, left hemisphere 794.1
2281 Male, age 75, right hemisphere 788.0
2758 Male, age 80, both hemispheres 787.4
Ventral thalamic nuclei
nTPM: 808.1
1860 Male, age 76, both hemispheres 828.3
2580 Male, age 66, unknown 818.4
2291 Female, age 72, unknown 817.9
1845 Male, age 48, unknown 814.0
1912 Female, age 42, unknown 809.8
2652 Male, age 74, left hemisphere 802.9
2285 Male, age 62, unknown 802.6
2204 Male, age 80, both hemispheres 798.2
2858 Female, age 72, unknown 780.4
Ventromedial nucleus
nTPM: 791.8
1982 Female, age 72, unknown 800.4
1822 Female, age 42, unknown 783.2
Zona incerta
nTPM: 807.9
2215 Male, age 66, unknown 835.4
2822 Male, age 74, right hemisphere 829.1
2403 Male, age 62, unknown 803.6
2208 Male, age 80, right hemisphere 789.3
2663 Female, age 72, unknown 782.1

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 193.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 193.3
FF:10154-103A1 76 years, female 193.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 221.7
Pig sample Sample description nTPM
Thalamus
nTPM: 221.7
Samples: 4

Max nTPM: 260.6
Min nTPM: 159.7
Sample A Female 209.7
Sample B Female 159.7
Sample C Male 256.8
Sample D Male 260.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 331.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 331.6
Samples: 4

Max nTPM: 427.7
Min nTPM: 282.3
Sample A Male 427.7
Sample B Male 286.4
Sample C Female 330.0
Sample D Female 282.3

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.2
68301867 Antisense, RP_041130_02_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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