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RPS13
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:660.8 nTPM
GTEx:660.8 nTPM
FANTOM5:283.3 Scaled Tags Per Million
Pig:84.5 nTPM
Mouse:487.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 660.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 660.8
Samples: 105

Max nTPM: 1266.6
Min nTPM: 444.4
Std nTPM: 120.3
Median nTPM:
491_1 89 years, female 1266.6
35_1 74 years, female 947.0
495_1 57 years, female 908.2
153_1 70 years, female 904.6
490_1 67 years, female 860.9
389_1 86 years, female 845.2
308_1 70 years, female 815.2
414_1 84 years, female 814.6
139_1 64 years, female 802.3
384_1 83 years, male 794.8
466_1 57 years, female 794.2
17_1 71 years, male 782.3
162_1 79 years, female 781.7
379_1 60 years, male 772.4
120_1 70 years, female 772.1
119_1 70 years, female 771.3
375_1 74 years, female 768.7
413_1 59 years, female 767.0
126_1 63 years, male 762.6
396_1 62 years, male 759.6
321_1 62 years, female 757.4
4_1 88 years, female 756.9
315_1 62 years, female 756.5
145_1 84 years, male 746.7
347_1 72 years, male 744.7
307_1 66 years, female 738.0
415_1 77 years, female 732.1
322_1 76 years, male 730.3
501_1 88 years, male 726.4
137_1 83 years, male 723.9
311_1 78 years, male 719.3
246_1 77 years, male 714.1
355_1 70 years, female 714.1
89_1 63 years, male 711.8
109_1 81 years, female 706.4
386_1 76 years, male 702.6
452_1 88 years, female 700.4
142_1 61 years, female 693.9
2_1 77 years, female 687.0
526_1 61 years, male 685.9
518_1 75 years, female 683.9
394_1 75 years, female 681.2
32_1 67 years, male 677.4
99_1 64 years, male 670.4
6_1 73 years, female 670.2
218_1 71 years, female 664.0
265_1 87 years, male 663.7
404_1 82 years, female 662.7
41_1 94 years, female 660.2
377_1 82 years, female 655.2
217_1 76 years, male 653.8
499_1 55 years, female 648.4
42_1 85 years, male 645.9
149_1 88 years, male 645.4
117_1 61 years, male 644.9
189_1 76 years, male 638.6
376_1 75 years, female 636.0
81_1 67 years, male 635.7
18_1 88 years, male 632.9
320_1 89 years, female 632.5
314_1 67 years, male 624.0
254_1 77 years, female 619.5
405_1 91 years, male 618.7
353_1 82 years, female 614.9
173_1 67 years, male 612.3
468_1 89 years, male 611.5
447_1 81 years, male 608.9
313_1 79 years, female 607.5
354_1 81 years, female 607.1
251_1 78 years, male 603.9
317_1 60 years, male 603.4
319_1 81 years, male 598.5
237_1 82 years, male 596.3
266_1 85 years, male 596.2
324_1 76 years, male 592.9
348_1 84 years, male 592.1
295_1 61 years, female 588.2
503_1 68 years, male 582.5
316_1 62 years, male 576.7
351_1 91 years, male 576.2
243_1 75 years, male 574.6
9_1 66 years, female 572.9
349_1 83 years, male 572.7
288_1 66 years, female 569.0
43_1 64 years, female 565.3
115_1 83 years, male 555.3
335_1 73 years, female 553.0
286_1 68 years, female 552.1
229_1 69 years, female 547.7
172_1 72 years, female 540.1
352_1 62 years, male 539.0
291_1 76 years, male 538.1
517_1 88 years, male 528.0
318_1 68 years, male 519.3
350_1 84 years, female 518.9
264_1 73 years, female 515.3
425_1 59 years, female 511.8
480_1 63 years, male 507.4
506_1 65 years, male 506.5
406_1 79 years, male 494.7
356_1 87 years, female 491.1
177_1 74 years, male 477.0
292_1 71 years, male 471.9
163_1 78 years, male 445.6
293_1 68 years, female 444.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 283.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 283.3
FF:10030-101E3 24-65 years, mixed 283.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.5
Pig sample Sample description nTPM
Retina
nTPM: 84.5
Samples: 4

Max nTPM: 110.6
Min nTPM: 59.9
Sample A Female 59.9
Sample B Female 85.4
Sample C Male 110.6
Sample D Male 82.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 487.2
Mouse sample Sample description nTPM
Retina
nTPM: 487.2
Samples: 4

Max nTPM: 717.9
Min nTPM: 382.6
Sample A Male 453.7
Sample B Male 382.6
Sample C Female 717.9
Sample D Female 394.4

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by the Knut & Alice Wallenberg Foundation.